Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01349 ATGGCTGGAAGTGTTGATGTTTTAGCTCCTGATTGCAGCGTTAATGGAACAACGAAATCTTTGCCTGAGGTTCTCAATTCCACGGCTTTTATATCAGATCATGTGCCACTCGTAGCCGGAGAGAATGGCATTGGCAAGGGAGAGGCTCAGAATGGTACAGAAAATGGGGAGAGAAAGATTGTCCTGGGAAGAAATATTCATACCATGTGCCTTGAAATTTCGGAGCCTGATATAGATGATGAGGTTACTGGTGAAAGGGAAGCTTATATGGCAAGCTACCCTTATAATTTGGATTTTGACTATGAGGCACTCTCTCAACTTCAGCACTTTTCCATCAACAACTTGGGAGATCCATTTATTGAAAGCAACTATGGTGTCCACTCCAGGCAGTTTGAGGTTGGTGTTTTGGACTGGTTTGCACGGTTGTGGGAATTGGAGAAAGATGAGTACTGGGGCTATATAACAAACTGTGGCACAGAGGGCAATCTCCATGGAATCCTTGTTGGGAGAGAGGTTTTCCCAGATGGGATTTTATATGCCTCACAGGAGTCACATTATTCTGTTTTCAAAGCTGCTCGTATGTACAGAATGGAATGTGTGAAGATTGACACTCTTTGTTCTGGTGAGATTGATTGTGATGATTTCAAGGCCAAGCTTCTTTGTCACAGGGACAGACCAGCAATTGTGAATGTGAACATAGGTACAACTGTGAAAGGAGCTGTGGATGACCTTGATCTGGTTATAAAGAAACTTGAGGAAGCAGGATTTTCACATGACAGGTTCTACATTCATTGTGATGGAGCTCTGTTTGGTCTCATGTTACCTTTTGTGAAACGTGCTCCAAAAGTTTCTTTCAAGAAGCCTATAGGGAGTGTGAGTGTTTCTGGACACAAGTTCGTGGGGTGCCCAATGCCCTGTGGCGTGCAGATAACGCGATCGGAGCATGTGAAGGCTCTTTCGAGGAACGTGGAGTATCTTTCTTCGAGGGACGCGACGATCATGGGAAGCAGAAACGGACACGCGCCGATATTCCTCTGGTACAATCTAAACATGAAAGGGTACAGAGGTTTTCAGAAAGAGGTGCAGAAGTGTTTGCGCAATGCACACTACTTCAAAGGTCGGCTTGTGGATGCAGGCATTGGAGCAATGCTGAACGAGCTGAGCAGCACCGTCGTGTTCGAGAGACCACATGAGGAGGAGTTCGTGCACAGGTGGCAGTTGGCTTGCCAAGGAAACATCGCTCATGTGGTGGTGATGCCAAATGTCACCATAGAGAAGCTTGATGATTTTCTAAATGAACTCGTGCAGAAGCGTCAAGACTGGTTCCGAGATGGCAAGTTACAACCTTATTGCATAGCTTCTGCTGTGGGACACAATAATTGCCTCTGTGCTATCCATAGGTGA 1404 0.4573 MAGSVDVLAPDCSVNGTTKSLPEVLNSTAFISDHVPLVAGENGIGKGEAQNGTENGERKIVLGRNIHTMCLEISEPDIDDEVTGEREAYMASYPYNLDFDYEALSQLQHFSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITNCGTEGNLHGILVGREVFPDGILYASQESHYSVFKAARMYRMECVKIDTLCSGEIDCDDFKAKLLCHRDRPAIVNVNIGTTVKGAVDDLDLVIKKLEEAGFSHDRFYIHCDGALFGLMLPFVKRAPKVSFKKPIGSVSVSGHKFVGCPMPCGVQITRSEHVKALSRNVEYLSSRDATIMGSRNGHAPIFLWYNLNMKGYRGFQKEVQKCLRNAHYFKGRLVDAGIGAMLNELSSTVVFERPHEEEFVHRWQLACQGNIAHVVVMPNVTIEKLDDFLNELVQKRQDWFRDGKLQPYCIASAVGHNNCLCAIHR 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01349 467 PANTHER - 51 467 - -
Vimu11g01349 467 ProSitePatterns DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 291 312 IPR021115 GO:0016831
Vimu11g01349 467 SUPERFAMILY PLP-dependent transferases 94 440 IPR015424 -
Vimu11g01349 467 Pfam Pyridoxal-dependent decarboxylase conserved domain 177 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vimu11g01349 467 Gene3D Aspartate Aminotransferase, domain 1 350 439 IPR015422 GO:0003824
Vimu11g01349 467 Gene3D - 105 349 IPR015421 GO:0003824
Vimu11g01349 467 FunFam Serine decarboxylase 1 106 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01349 Vimu-Chr11 14965406 14967707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01349 190 372 Calmodulin-binding Proteins AT1G65960 26.042 7.27e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01349 K25193 - gmx:100792053 860.522