Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01340 ATGGGAGGAAACCAGTCGTGCCTTTTGGCCGCTGAAGCAGGTGGCTCAGCTCATGTCTTAATCCAAACATTATGTACTAATGCTTGTCTTCCTGCATTTATGCAGTTTAAAATGTCTGATGTGGAAGAGTATCGCTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAATTAAAGGATACATTTGAAAAGTTTGGCAAGCTGGTTGAGGCAAAGGTTGTTGTTGACAAGTTCTCTGGGCGTTCACGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGAGGCTATTGATGCTATGAATGGGATGGATTTAGATGGGCGGACTATTACTGTTGATAGAGCCCAGCCTCAACAAGGATCAACTAGAGATGATGGTGATCGCTACCGGGAGCGTGGCCGTGATCGTGATCGTAACCGAGATTATGGAGGTGGAGGGGCCCGAGGATCTAACGGTGGTGAATGCTTTAAGTGTGGAAAACCTGGTCATTTTGCTAGGGAATGCCCTGGTGAAGGGTCCAGGGGTGGCGGAAGGTATGGTGGTAGGGAAAGTAGACATGGTGGAAGCAGTGGTGGTGGTCACTATGGGCCAGATAGAAATGCAGATCGTTCTTCAGGGGGGCGCAACAGGGATGGCGGTAGTCATGGAGATTCTGGAAATGACCGATATCATCGTGATCGTGCAGGACCGTATGAGCGAGAGCGACGGGGATCAGGAGGCTTTCGTTGA 744 0.4852 MGGNQSCLLAAEAGGSAHVLIQTLCTNACLPAFMQFKMSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIDAMNGMDLDGRTITVDRAQPQQGSTRDDGDRYRERGRDRDRNRDYGGGGARGSNGGECFKCGKPGHFARECPGEGSRGGGRYGGRESRHGGSSGGGHYGPDRNADRSSGGRNRDGGSHGDSGNDRYHRDRAGPYERERRGSGGFR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01340 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Vimu11g01340 247 MobiDBLite consensus disorder prediction 125 148 - -
Vimu11g01340 247 MobiDBLite consensus disorder prediction 206 247 - -
Vimu11g01340 247 Gene3D - 35 155 IPR012677 -
Vimu11g01340 247 SMART c2hcfinal6 159 175 IPR001878 GO:0003676|GO:0008270
Vimu11g01340 247 SMART rrm1_1 45 118 IPR000504 GO:0003723
Vimu11g01340 247 CDD RRM2_NsCP33_like 45 120 - -
Vimu11g01340 247 Gene3D - 156 215 - -
Vimu11g01340 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 116 IPR000504 GO:0003723
Vimu11g01340 247 MobiDBLite consensus disorder prediction 117 247 - -
Vimu11g01340 247 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 38 241 - -
Vimu11g01340 247 FunFam Glycine-rich RNA-binding protein RZ1A 38 155 - -
Vimu11g01340 247 SUPERFAMILY Retrovirus zinc finger-like domains 142 178 IPR036875 GO:0003676|GO:0008270
Vimu11g01340 247 ProSiteProfiles Zinc finger CCHC-type profile. 160 174 IPR001878 GO:0003676|GO:0008270
Vimu11g01340 247 Pfam Zinc knuckle 159 174 IPR001878 GO:0003676|GO:0008270
Vimu11g01340 247 SUPERFAMILY RNA-binding domain, RBD 27 152 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01340 Vimu-Chr11 14890308 14893626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01340 46 156 Eukaryotic Initiation Factors Gene Family AT1G71770 34.234 3.37e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01340 - - gmx:100815224 304.293