Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01328 ATGGGTTCATACGTAGAATGTTGTATGTACGAGGTAAGGTACCCGGAGGTGGAAGTGGCGGTGATGATACAGGTGGGGCGCATCGAGCCCATCATAGTCCTCCGTGTCGACAAGGAAAAGTGTTACATCGATATCAGAGAGCGTAGGGTCTACGAAGAGGATATGCAAACCTGCAAGGAGAGATACAACAAGAGCAAGCTCGTCCACTCCATCATGTGCCGCATTGCTGAAATCCTCAACATCGATTTGGAGGAGCTTTATGTTCACATTGGAGGTCATGCTTTTGAGCTGTCGTTTTCCCTCAGTCGAACCGAAGTTGTGGTCGTACTTGAACATGTGTCGAACCTTAACGAGAAGTCTCCTCTGTCGAACCCTAACTTGAAGTCTCCCCTGTCGAACGCAGAGAAAACCTTTTCTATCGAACGCACTGAAGCTCTTGGAAGCGTTTTCCCTAATTGTGGTTGTGCTCAACAAACACTGTTGGAAATCCCGATTTCTGAAACCGTAGGTTGGTTTCTTCTTACTGGAAGAGATAATGTCGAGCTCCGATTTCCTTCTGGACTTGGTAAGTATTAA 576 0.4688 MGSYVECCMYEVRYPEVEVAVMIQVGRIEPIIVLRVDKEKCYIDIRERRVYEEDMQTCKERYNKSKLVHSIMCRIAEILNIDLEELYVHIGGHAFELSFSLSRTEVVVVLEHVSNLNEKSPLSNPNLKSPLSNAEKTFSIERTEALGSVFPNCGCAQQTLLEIPISETVGWFLLTGRDNVELRFPSGLGKY 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01328 191 Gene3D Translation initiation factor 2; subunit 1; domain 2 52 98 IPR024054 -
Vimu11g01328 191 SUPERFAMILY eIF2alpha middle domain-like 50 91 IPR024054 -
Vimu11g01328 191 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 22 113 IPR011488 GO:0003723|GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01328 Vimu-Chr11 14747761 14749553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01328 5 96 Eukaryotic Initiation Factors Gene Family AT2G40290 50.000 2.82e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01328 K03237 - gmx:100815696 125.946