Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01319 GCCATTAAACCCGACTCCGCTGCTCCCGCCTTTCCTCCACCGACCCCTGCAATAATGGTGAACGTTCCGAAGACGAAGAAAACCTACTGCAAGAGCAAGGAGTGCAGGAAGCACACCCTCCACAAGGTCACCCAATACAAGAAGGGTAAGGACAGCATCGCCGCTCAGGGAAAAAGACGTTATGACCGTAAACAGTCCGGTTACGGTGGACAGACCAAGCCCGTTTTCCACAAAAAGGCCAAAACCACCAAGAAAATTGTGCTGAGGCTCCAGTGCCAGGGATGCAAACATGTGTCCCAACATCCAATCAAGAGGTGCAAGCACTTCGAAATCGGCGGCGACAAGAAGGGAAAGGGAACCTCTTTTGGCGGAAGGGGCCGAGTGGCGGGAGGGGAGGTTGAGGCTTTCGAAGAGGTTCCCATGGGAGTTCTCTTGGAGGTGCATTTGAATGCTGTGGTGGCCATCGGAGAAAGGAGAGAAAGGAGAAAGTGA 492 0.5346 AIKPDSAAPAFPPPTPAIMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSFGGRGRVAGGEVEAFEEVPMGVLLEVHLNAVVAIGERRERRK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01319 163 ProSitePatterns Ribosomal protein L44e signature. 81 92 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vimu11g01319 163 MobiDBLite consensus disorder prediction 46 80 - -
Vimu11g01319 163 FunFam 60S ribosomal protein L44 19 123 - -
Vimu11g01319 163 Pfam Ribosomal protein L44 37 112 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vimu11g01319 163 SUPERFAMILY Zn-binding ribosomal proteins 20 112 IPR011332 GO:0006412
Vimu11g01319 163 Gene3D - 19 123 - -
Vimu11g01319 163 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 19 121 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vimu11g01319 163 MobiDBLite consensus disorder prediction 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01319 Vimu-Chr11 14604634 14605963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01319 19 122 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 91.346 1.42e-66 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01319 K02929 - qsa:O6P43_031582 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01319 11 14604634 14605963 Vimu2g00370 2 2082025 2083012 PCT