Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01316 ATGGCAGATAACAATGTCAACCTCCCACCCGGCTTTCACTTTTATCCCACAGATGAAGAGCTTGTCGTCCATTTCCTCCAAAGAAAGGCAAATCTTCTACCTTGCCATCCAGATGTCATCCCTGATCTTGAACTCTACCCTTATGATCCTTGGGAACTTCATGGTAGAGCTTTGGCAGAGGGAAAGCAATGGTACTACTACAGCAGGAGGGCACAAAATAGGGTCACTGGGAATGGTTATTGGATTCCAATGGGAATGGAAGAGCCAGTGATTACAAGCTCAAGCAACAAGAGAGTTGGCATGAAGAAATATTATGTTTTCCATGTGGGAGAAGCCCCTGATGGTAACACCACCAATTGGATAATGCAAGAGTATCGTCTATTAGATTCTGCTTCTTCTAGCAGATCATCCAGAAGAAGACCACAACCAAAACCGGATCACAGTAAATGGGTGATATGTCGAGTTTATGAGCGGGATAACGATGATGATGATGGTGATGGAACAGAGCTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGAGGAAATAATTAAAGCCTTTAGCAGTTTAGCTTCCATTGTAATCAGTGAAGTCGCTATAGCTAGATTTCCACATAGCAGCCTTTCAAGTGGGGCACTAGGTGAAACTCATGGGCAAACCAAACAATATGCAGTGGTTGTGGAGCCCATTGAGCACTCCAAGGGATGCTTGCAAGTGAACATTGGGCAATAG 741 0.4386 MADNNVNLPPGFHFYPTDEELVVHFLQRKANLLPCHPDVIPDLELYPYDPWELHGRALAEGKQWYYYSRRAQNRVTGNGYWIPMGMEEPVITSSSNKRVGMKKYYVFHVGEAPDGNTTNWIMQEYRLLDSASSSRSSRRRPQPKPDHSKWVICRVYERDNDDDDGDGTELSCLDEVFLSLDDLEEIIKAFSSLASIVISEVAIARFPHSSLSSGALGETHGQTKQYAVVVEPIEHSKGCLQVNIGQ 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01316 246 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Vimu11g01316 246 PANTHER NAC TRANSCRIPTION FACTOR 56 8 165 - -
Vimu11g01316 246 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Vimu11g01316 246 Pfam No apical meristem (NAM) protein 9 127 IPR003441 GO:0003677|GO:0006355
Vimu11g01316 246 Gene3D NAC domain 17 162 IPR036093 GO:0003677|GO:0006355
Vimu11g01316 246 FunFam NAC domain-containing protein 104 17 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01316 Vimu-Chr11 14595766 14597577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01316 6 158 NAC Transcription Factor Family AT1G52890 44.720 2.14e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu11g01316 NAM 6.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01316 - - gmx:100788893 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01316 11 14595766 14597577 Vimu11g01316 11 14595766 14597577 ECH
Vimu11g01316 11 14595766 14597577 Vimu2g00372 2 2101674 2102804 PCT