Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01307 ATGAGCAACAAGGAGCGAGTTCCATCTTTAATATTCTTCTATATTCTGTTTTGGATTGTTCTTCACTTGGTGCTCAGGGTTTCTGGAAATGCAGAAGGTGATGCCCTTACAGTATTCAAGAACAATGTCATAGATCCTACTGGTGCTCTTCGTAATTGGGATCCTAATATTTTAAATCCTTGCACATGGTTTCATGTTGTTTGCAACGGTGAAAGTAGCGTAACACGTTTGGATCTTGGAAATGCAAAACTTTCGGGTCAACTTGTTCCAGAGCTTGGCCAGCTCCCAAATTTGGAATATCTGGAACTTCATTACAATAATATAAGTGGGGAGATCCCAAATGTGCTTGGAAATTTGACAAACTTGCTGAGTTTGGATCTTTCCTCGAACCAGATTACTGGTCAAATTCCAGAAGAATTAGGCAATCTTAAAATACTACAATCCCTGCGCCTCAACAAAAACAAGTTGACAGGAAAGATTCCTATGGGTTTGACCAATATTGATACACTGATGGTTCTTGACTTATCGTACAACAACTTAACAGGGAATGTCCCAGCCAATGGTTCATTTTCACGTTTTACTCCCATCAGTTTTAGCAATAATACTTACTTGGTGCAACCCATTGCAATTTCACCACCCGCCACACAGAAACAAAATCCTTCAGGTAATAGTTTCAGATCTATTGGAGTCATTGCTGGAGGAGTTGCAGTAGGCGCTGCACTGTTGTTTGCAGCTCCAGTAATTGCATTTGTTTACTGCAAAAGAAGGAAGCCACCAGATTATTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCGCTGCATGAACTGCTAGTTGCAACAGATGGCTTTAATAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTAGTTGCAGTAAAAAGACTTAACCAAGAACGTATCCGGAGTGAGGAGAAACAGTTTCAAACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACAACTACTGAAAGATTGCTTGTGTATCCTTTCATGGTGAAAGCACTTCTGAAGGAGCAGAAGTTAGAGACACTGGTGGATGCAGATTTACAGGGAGATTATGATGAGGGGGAACTAGAGAAGTTAATTCAAATAGCTTTGCTATGCACACAAAGTTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGACAAGGTTTAGAAGAAAAGTGGGACCAATGGGGGAAGAAAGAGGATATGATCCAAAAAAATTACAACCCCTTCAATCTCTACGTTGCTTACGACTCAACTTCAAATATTCCACCAGATGAACTGTCTGGTCCTAGATGA 1419 0.4045 MSNKERVPSLIFFYILFWIVLHLVLRVSGNAEGDALTVFKNNVIDPTGALRNWDPNILNPCTWFHVVCNGESSVTRLDLGNAKLSGQLVPELGQLPNLEYLELHYNNISGEIPNVLGNLTNLLSLDLSSNQITGQIPEELGNLKILQSLRLNKNKLTGKIPMGLTNIDTLMVLDLSYNNLTGNVPANGSFSRFTPISFSNNTYLVQPIAISPPATQKQNPSGNSFRSIGVIAGGVAVGAALLFAAPVIAFVYCKRRKPPDYFFDVAAEEDPEVNFGQLKRFSLHELLVATDGFNNKNILGRGGFGKVYKGRLTNGDLVAVKRLNQERIRSEEKQFQTEVEMISMAVHRNLLRLIGFCMTTTERLLVYPFMVKALLKEQKLETLVDADLQGDYDEGELEKLIQIALLCTQSSPLDRPKMSEVVRMLEGQGLEEKWDQWGKKEDMIQKNYNPFNLYVAYDSTSNIPPDELSGPR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01307 472 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 381 435 - -
Vimu11g01307 472 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Vimu11g01307 472 Pfam Leucine rich repeat 96 156 IPR001611 GO:0005515
Vimu11g01307 472 FunFam Somatic embryogenesis receptor kinase 1 262 369 - -
Vimu11g01307 472 Gene3D Phosphorylase Kinase; domain 1 262 369 - -
Vimu11g01307 472 SMART LRR_typ_2 119 143 IPR003591 -
Vimu11g01307 472 SMART LRR_typ_2 95 118 IPR003591 -
Vimu11g01307 472 Gene3D Ribonuclease Inhibitor 29 211 IPR032675 -
Vimu11g01307 472 FunFam Somatic embryogenesis receptor kinase 1 28 217 - -
Vimu11g01307 472 ProSiteProfiles Protein kinase domain profile. 293 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01307 472 PRINTS Leucine-rich repeat signature 167 180 - -
Vimu11g01307 472 PRINTS Leucine-rich repeat signature 122 135 - -
Vimu11g01307 472 SUPERFAMILY L domain-like 32 202 - -
Vimu11g01307 472 ProSiteProfiles Leucine-rich repeat profile. 121 144 IPR001611 GO:0005515
Vimu11g01307 472 ProSiteProfiles Leucine-rich repeat profile. 97 120 IPR001611 GO:0005515
Vimu11g01307 472 Pfam Protein kinase domain 294 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01307 472 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Vimu11g01307 472 SUPERFAMILY Protein kinase-like (PK-like) 273 372 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01307 Vimu-Chr11 14478402 14484114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01307 371 472 Receptor kinase-like Gene Family AT1G71830 61.905 1.40e-30 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu11g01307 Pkinase 6.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01307 K13416 K13418 gmx:100804708 491.886