Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01305 ATGACTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAGAAGGTTTTCATTGCACGAACTGCAAGTTGCAACAGATAGCTTTAACAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGAGATCTGGTAGCAGTAAAAAGACTTAAAGAGGAACGAACCCAGGGTGGGGAGATGCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATCTGCTTCGCCTGCATGGTTTTTGCATGACACCTACTGAACGTTTGCTTGTATACCCTTTCATGGTTAATGGAAGTGTAGCTTCATGTTTACGAGGTACCCTTACCAGTCTACTTTATCAGAGAGGATTAATGTGA 387 0.4186 MTEEDPEVHLGQLRRFSLHELQVATDSFNNKNILGRGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMVNGSVASCLRGTLTSLLYQRGLM 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01305 128 FunFam Somatic embryogenesis receptor kinase 1 1 104 - -
Vimu11g01305 128 ProSitePatterns Protein kinases ATP-binding region signature. 34 56 IPR017441 GO:0005524
Vimu11g01305 128 SUPERFAMILY Protein kinase-like (PK-like) 9 118 IPR011009 -
Vimu11g01305 128 ProSiteProfiles Protein kinase domain profile. 28 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01305 128 Pfam Protein tyrosine and serine/threonine kinase 31 117 IPR001245 GO:0004672|GO:0006468
Vimu11g01305 128 Gene3D Phosphorylase Kinase; domain 1 1 104 - -
Vimu11g01305 128 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01305 Vimu-Chr11 14466313 14470406 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01305 2 115 Receptor kinase-like Gene Family AT1G34210 89.474 9.69e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vimu11g01305 PK_Tyr_Ser-Thr 9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01305 K13416 - gmx:100804180 218.394