Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01300 ATGGATGCTTTATCCTTAAGTTCAACTTCAAGCCTAAACATGTGCAAGCCCTTTCAATCTCATGGCCTTTCACTCTCTAAGCAGCAAAGAGTTTCCACTTCGAAGTTTAGTACTGTTTCATGCAGAGCCACAACCCAAGAAAACTTGTACAAGGTACTGTCTGTGAGTCCGGAAAGAGCAACAATGGATGAGATTAAGAGGGCTTATAGGTCTATGGCTCTTAGGTACCACCCTGATGTGTGCCACGATCCCACCATGAAAGAGGAGTCAACGAGGCTGTTTGTGCTGGTGAATGCAGCTTACAAGACCTTGTCCAATCCAAGGCTTCGAGAACAGTACGACAGTGAATTGGGTCTGAGAAGCAAAATCATGAGTGGCGGTAGTGATCATGAAAGATGGGGAAGTGTGAGTGTTTGTAGTGATTTTGAGAGATGGGGTAGTAAGTTTCAGGAGGAAGTGATTGAGGTGAAGACAAGGTCTCGTAGACGAATGGGACAAAAGGGAGGATCATCAGCTACCAGAATGAGAACACAAAACATGAAAGACAGACATTGA 555 0.4468 MDALSLSSTSSLNMCKPFQSHGLSLSKQQRVSTSKFSTVSCRATTQENLYKVLSVSPERATMDEIKRAYRSMALRYHPDVCHDPTMKEESTRLFVLVNAAYKTLSNPRLREQYDSELGLRSKIMSGGSDHERWGSVSVCSDFERWGSKFQEEVIEVKTRSRRRMGQKGGSSATRMRTQNMKDRH 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01300 184 SMART dnaj_3 47 109 IPR001623 -
Vimu11g01300 184 MobiDBLite consensus disorder prediction 158 184 - -
Vimu11g01300 184 PRINTS DnaJ domain signature 89 109 IPR001623 -
Vimu11g01300 184 PRINTS DnaJ domain signature 51 69 IPR001623 -
Vimu11g01300 184 PRINTS DnaJ domain signature 69 84 IPR001623 -
Vimu11g01300 184 Pfam DnaJ domain 48 114 IPR001623 -
Vimu11g01300 184 ProSiteProfiles dnaJ domain profile. 48 117 IPR001623 -
Vimu11g01300 184 CDD DnaJ 48 106 IPR001623 -
Vimu11g01300 184 SUPERFAMILY Chaperone J-domain 38 113 IPR036869 -
Vimu11g01300 184 Gene3D DnaJ domain 34 132 IPR036869 -
Vimu11g01300 184 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 25 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01300 Vimu-Chr11 14420400 14422277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01300 50 124 C2H2 Transcription Factor Family AT1G74250 38.961 1.28e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01300 - - gmx:100811478 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01300 11 14420400 14422277 Vimu2g00387 2 2211090 2211587 PCT