Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01298 ATGACAAGTGTTAACATTGTTTTGGTGGATTCATTTCCTGTTGAATGTTGCAATTGCAGGCTACCAGGTGACTATGGTTTTGACCCTCTAGGACTGGGGAAAGACCCAGCATTTCTGAAATGGTATAGAGAAGCTGAACTGATTCATGGGAGGTGGGCGATGGCTGCAGTTGTAGGCATCTTTATTGGGCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGATCCTAATGCAGTTGCTCCTTTCTCCTTTGGTTCTCTTTTGGGTACCCAGTTGCTTCTAATGGGATGGGTTGAGAGCAAGAGATGGGTGGATTTCTTCAACCCAGATTCTCAGTCAGTGGAATGGGCTACCCCATGGTCAAAAACTGCTGAGAATTTTGGCAACTCCACTGGTGATCAAGGCTACCCTGGGGGCAAATTCTTTGACCCTTTGGGATTTGCTGGCACAATCAAGGATGGTGTTTACATTCCTGATGCAGACAAGCTACAGAGACTGAAATTGGCTGAGATAAAGCATGCCAGGATTGCAATGTTGGCCATGCTTATTTTCTACTTTGAGGCTGGACAGGGCAAGACTCCCCTTGGTGCTCTTGGCTTGTAA 609 0.4713 MTSVNIVLVDSFPVECCNCRLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWSGVPWFEAGADPNAVAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFGNSTGDQGYPGGKFFDPLGFAGTIKDGVYIPDADKLQRLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01298 202 Pfam Chlorophyll A-B binding protein 20 190 IPR022796 -
Vimu11g01298 202 FunFam Chlorophyll a-b binding protein, chloroplastic 14 201 - -
Vimu11g01298 202 Gene3D Chlorophyll a/b binding protein domain 15 201 - -
Vimu11g01298 202 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 18 200 IPR001344 GO:0009765|GO:0016020
Vimu11g01298 202 SUPERFAMILY Chlorophyll a-b binding protein 18 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01298 Vimu-Chr11 14380524 14381132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01298 15 202 Chloroplast and Mitochondria Gene Families AT1G15820 86.170 5.46e-120 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01298 K08917 - gmx:100783223 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01298 11 14380524 14381132 Vimu2g00391 2 2230591 2231651 PCT