Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01279 ATGTCTGTGTTCTGGAGCCTCTGCACGGTGAAGAATTTTGCTGATGTTGAATATGAGACTAGTGATCCTAGTGTTATAATGAATTTTAGCGACTCTTATTCATGTGCAATTGGTTTATTTTGTTTTGTGCGTATGATTGGTGGGAATAATATTTCTCCACTAGTGTGTTTGATTGCTGACCATTCTGATCCTGAAAGTGCAGATTCTACAAGAGAGAATTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGACATAGACAATTAAGAGAAAGTGGTCGTGAGCTAGCAGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGGCCATTTCTCTCATTTCTTTGCAGCAAAGGCACCATGGATCCATGTCTTTCATTCCATTGGGTTTCATCTATCGTTATCTTTGTTTACATTGCTTGGTCCTGGCCGCCAGCTTATCCTTGATGGTTTAAAAAGCCTTCTTAAAACAACACCAAACATGAACACCTTAGTTGGTCTTGGGGCTTTGTCTTCATTTACTGTCAGCTCATTTGCTGCCTTAGTTCCAAAATTGGGATGGAAGGCTTTCTTTGAGGAGCCAATTATGCTAATTGCATTTGTGTTGCTAGGAAGGAATCTCGAACAGAGAGCTAAAATTAAAGCAACAAGTGATATGGCAGGACTTCTTAGTTTGTTGCCACCAAAAGCTCGCCTTCTAGTTAACAATGAGGAAACAGAGGCTGGCTCAGTTGTTGAAGTTCCTTCCGAAAGTCTTTCTGTTGGAGACCAAATTATTGTGCTGCCTGGAGACCGTATTCCAGCTGATGGAGTTGTGAGAGCTGGTAGAAGCACTGTAGATGAATCAAGTTTCACTGGTGAACCACTGCCTGTAACAAAAGTGCCTGGGATTGTTGCTTCTATTGGTTCCTTTGAGCACCTATGGATGTTGTCCCAGTGGCAAATGTCTCTGTCACATACAATAAGCAATACCCTTGCTGTCATACTGGCAAAAAGTGAGGTAGCAGCTGGTAGTATAAATCTTAACGGAACTCTTACAATGGAAGTGCAACGACCAGGTGGCGAAACTTCTATGGCAAACATTGTTCGTCTGGTTGAAGAGGCACAAAGTAGGGAGGCTCCTGTACAACGGTTGGCAGACAAGGTTGCTGGACATTTCACTTATGGAGTGATGGCAGCCTCTGCTGCTACTTTCACATTCTGGAGTCTGTATGGGGCACGCATTTTGCCTCCTGCTTTATATCAAGGAAATTCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGCGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGGTTGGAACATCTCTGGGGGCTAAAAGAGGTTTACTTCTACGTGGTGGAAACATTCTAGAGAAGTTTGCAATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACAATTGGTAGACCTGTTGTGACAAACATTGTCACTGCGCCATGCATGAAAAATGCTATTTCAAGCGAAACTGAAGAAAATGCTTTGTCTGATATTGAAGTTCTAAGGCTAGCAGCTGCAGTAGAATCGAATTCCATACATCCAGTTGGGAAAGCGATTGTGGATGCTGCTGTGGCTGTTAATTGTCATAATGCTAAGGTAATAGATGGAACATTCCTGGAAGAACCTGGATCTGGTGCAGTGGCAACAATTGATAACAAAAAGGTTTCGGTTGGTACATTGGAATGGATCACCAGGCATGGAGTTATTGACAGTTTAGATCAAGAAGTGGAGAAATGTAATAATCAATCCTTTGTCTATGTTGGAATTGACAATACTTTAGCTGGCCTAATTTATTTTCAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTTAAAGCAAAATCTAGATATATACATGCTATCAGGAGACAAGAGGAATGCTGCTGAGCATGTTGCTTCTCTTGTTGGAATTCCCAAAGATAAGGTGAAAGGCTTTTAA 2001 0.4213 MSVFWSLCTVKNFADVEYETSDPSVIMNFSDSYSCAIGLFCFVRMIGGNNISPLVCLIADHSDPESADSTRENFLQIFERKMEERHRQLRESGRELAVSWALCAVCLVGHFSHFFAAKAPWIHVFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKTTPNMNTLVGLGALSSFTVSSFAALVPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMAGLLSLLPPKARLLVNNEETEAGSVVEVPSESLSVGDQIIVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKVPGIVASIGSFEHLWMLSQWQMSLSHTISNTLAVILAKSEVAAGSINLNGTLTMEVQRPGGETSMANIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLYGARILPPALYQGNSVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTNIVTAPCMKNAISSETEENALSDIEVLRLAAAVESNSIHPVGKAIVDAAVAVNCHNAKVIDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVIDSLDQEVEKCNNQSFVYVGIDNTLAGLIYFQDEIREDARDVVDRLLKQNLDIYMLSGDKRNAAEHVASLVGIPKDKVKGF 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01279 666 SUPERFAMILY Calcium ATPase, transmembrane domain M 191 498 IPR023298 -
Vimu11g01279 666 SUPERFAMILY HAD-like 464 660 IPR036412 -
Vimu11g01279 666 PRINTS P-type cation-transporting ATPase superfamily signature 280 294 - -
Vimu11g01279 666 PRINTS P-type cation-transporting ATPase superfamily signature 476 490 - -
Vimu11g01279 666 PRINTS P-type cation-transporting ATPase superfamily signature 634 644 - -
Vimu11g01279 666 PRINTS P-type cation-transporting ATPase superfamily signature 612 623 - -
Vimu11g01279 666 ProSitePatterns E1-E2 ATPases phosphorylation site. 478 484 IPR018303 -
Vimu11g01279 666 PANTHER ATP7, ISOFORM B 332 663 - -
Vimu11g01279 666 Pfam haloacid dehalogenase-like hydrolase 472 657 - -
Vimu11g01279 666 SUPERFAMILY Calcium ATPase, transduction domain A 241 365 IPR008250 -
Vimu11g01279 666 FunFam Copper-transporting ATPase PAA1 chloroplastic 487 620 - -
Vimu11g01279 666 Pfam E1-E2 ATPase 225 456 - -
Vimu11g01279 666 Gene3D - 487 620 IPR023299 GO:0000166
Vimu11g01279 666 Gene3D - 467 659 IPR023214 -
Vimu11g01279 666 Gene3D - 211 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01279 Vimu-Chr11 14101554 14133124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01279 143 658 Primary Pumps ATPases AT1G63440 34.962 6.11e-77 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01279 K17686 - gmx:100796210 988.408