Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01278 ATGGATTCTGCATTCTCCGTCACCACGACGGCGCACATGGCGCTCTTCAGAGTGCTCCACCGTCATTTTGCCGGCGCTCCCCAACGCGCCTTCGTCCGCCGCAACCTCAGATGCCTCGTTGCTTCCTACAACAACTGCTGCCGCATTCCATGTTCTTTTACTTCCGCACCGTCGCCGTCCTCGCTCCGCTGCTTCGGCGGGTTGCTCCCGCGAAAGCCGTGCCGACTCCGCTGCATTTCGAGCTCCGCCGCTTCCTGTGCTTCTTCCACCGGCGGTGGAAATGGAGGCGGTGGAATCGGTGAAAACGGAGGTTCTGGCGGTTCTGGCGGTGAGTCTGGTGATGCTAATCTCCAATTGGTTGGTGACGCGTCACAGGAGCTTTCGGCACTTTCGCCTGACGTTATCATTCTCGATGTTTCAGGAATGGTGTGCGGGGGATGTGCGGCGAATGTGAAAAGGATACTGGAAAATCAAGTTTACTATGAGCGTGCGCCACAGGTGTCATCAGCTAGTGTAAATTTAACAACAGAGACAGCAATCGTTTGGCCTATATCTGAAGCAAAGAATGCACCAAATTGGCAAAAGCAATTAGGGGAGGCACTTGCAGAGCATTTAACCAGCTGTGGTTACAATTCTAGCCTCCGAGGTATTATTCATTCCTACCAGTTGAGCCAGCCATTATTGAGTCAATTCAGTGTTTTTTTATGTTTTTTTACCTTGGTATTTGCTTATTTTTCATAA 741 0.5128 MDSAFSVTTTAHMALFRVLHRHFAGAPQRAFVRRNLRCLVASYNNCCRIPCSFTSAPSPSSLRCFGGLLPRKPCRLRCISSSAASCASSTGGGNGGGGIGENGGSGGSGGESGDANLQLVGDASQELSALSPDVIILDVSGMVCGGCAANVKRILENQVYYERAPQVSSASVNLTTETAIVWPISEAKNAPNWQKQLGEALAEHLTSCGYNSSLRGIIHSYQLSQPLLSQFSVFLCFFTLVFAYFS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01278 246 ProSiteProfiles Heavy-metal-associated domain profile. 133 213 IPR006121 GO:0046872
Vimu11g01278 246 FunFam Copper-transporting ATPase PAA1, chloroplastic 133 214 - -
Vimu11g01278 246 Gene3D - 134 217 - -
Vimu11g01278 246 ProSitePatterns Heavy-metal-associated domain. 139 169 IPR017969 GO:0046872
Vimu11g01278 246 MobiDBLite consensus disorder prediction 85 115 - -
Vimu11g01278 246 SUPERFAMILY HMA, heavy metal-associated domain 135 190 IPR036163 GO:0046872
Vimu11g01278 246 CDD HMA 137 210 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01278 Vimu-Chr11 14099075 14100259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01278 118 215 Primary Pumps ATPases AT4G33520 62.245 5.09e-36 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01278 K17686 - vra:106773839 409.068