Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01272 ATGGCGGAGCGTGGTTCTTACGGATTGGGACCTCGATTAGAAAAGCTTATGTCTGCTGCTAAATGGGTTCTATTGTTGCAGTTTGCATCTGTATTTCAGAGAGCAACATGCTCTTCTGTCTTGGAAGAGCCAGCAATATCTGTAGTTGAGATTTTCAAGCAAAGCCTTTGCATCCAAGCTGTGAATTTCTTAATAGCAAAATATTTTGGTAGTTGTTTTAGCATGCTGATGCTTTGGTTGCTAGATCCTCTCTTTGGCATTGCATTATTGGAATTGAATAGTTTGCTAAATTGTGAATGTGATAGCATAGCAATCAAATGTTTAAGTGAACGCCATGTTCTATTATTTATTATCCTGCAGATCTTCAGCAACTACAACTTGAAGCCCAGAATAGGTGGTTGCGCCCTGCGGAAATATGTGAAATTCTTTGCAATTATCGGATGTTTCATATCACTTCAGAACCACCTAACAGGCCACCAATCTCGTGCATATGGGTGGATTGAATTGCTTAAATGCTTAAAATTACTTATCCATCATGAATGGTTTGTTGCAACTCGGTATTCCCGAGGTGGCTCGCTTTTTCTCTTTGATCGGAAGGTTTTAAGGTACTTCAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGCAAGCATGGATTTATTATTTTTCAGTTTGTGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACAGTGAGGATATGATGCATATAGTATTTGTGCACTACTTGGATGTTAAGGTATTTTACTTGTTTTCTTTATTTCACGCATTTACTTGGGCATTCCGCATCCTTAATAGAGCAAGAAATGTATCATTGCATGATTTTGTTGTTGTTGAAGTTTTGACCGGAGTTAACAAAACCAATGTTGGTGGAAAAACATATTCTGGGGAGGCCACCTCAGATTCCCAGAAGGGAAGTTCTTTGTCATCGGGCTTTCCTAGAAATTATGGTAGTGTGCCTTCAGGAAGTACAGATTCCATGAGCCCAACCAGCACTCTGACGTCTTTATGTGAAGATGCCGATTCAGAGGATATTCATCAAGCCAGTTCAGGATCACAATCCTATCATGAATCAAAATGTTTGGGGAATGATTGCCCTATCGATAAGATTGATGCTCGTTCAAATAGTTCATATCTTATGCATCCATCTTCAGGTGATCATGGACAGTTTCCAGTTCCTGGATCAGAATATATTCCACTTATTCAGGGTCATAGAGCACACGACACTGCATCATGGGACAATGCCATGGAGCAGTCTTCAGGAAAGCATACTGCTCCTTCTTTTGTATCATCTACATCCATTCCACCAAGTACATCAGGAAACATCCTTGAAGAAAACAATGCTGTTCCAGGCAACCTTTTAGGGCGTAAAAATGTCCTCATTGAAGAGGACAGGGTCTCTCAGGCTCTCCATTCAAATTGGCAGCACAAAGATATGTTTTATTTGAGGTTCCATTTGGAGCAGTTGTGCTATCTTGTTGTACAGGATGATGTCTTGAATTTTCTGTCTGGTTCCAGAAATCAAAGCTATTGCAATTATGGTGGAGCAATTCCTTTTGGGGACGATACTGGAGAATTACCTAAGTGGAGCCTTACCCAATCATTAGGTTTGGAATTTGGATCTGATTATGGCACTAGTTTACTGGGGGATGTAACTGATAATGCAGGCTCAGAAATTCTTGCTGAGATGTTCACTTTTAATGGTGAGTTAAAAGAGAAGTCTGTGCACCAAAACATCTCAAAGCAGTATACAAATACACAGTCTCAACCTGCAACAAAATCCAATTCTGATTATGAAGTGGCTGGTGAAGCAAGTATTAATTATACCTTGACCATGAAGCGTGGATTATTGGATGGAGAGGAAAGCTTAAAGAAGGTTGATAGTTTCTCTAGGTGGATTACTAAAGAATTTGCTGGTGTGGATGATCTGCATACGCAGTCCTCCCCTGGTATTTCATGGAACACAGATGATTGTGGGGATGTGATAGATGATACATCATTAAACCTGTCCCTTTCTCAAGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTGAAGAGTCAACCTATGGTGACAGCATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCAGAGGTTTTAGCAAATGGAATTTTATGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACGTGTTCCAATAGGTTTGCCTGTAGTGAAGTTCGGGAATTCGAGTACAGAGAAGGTTTCGACAGAAATATAGATTTCACAGAATTTTTTACCAGTTCAACTGAAATGGTCCTTCATTTGCGACTGGTGGGGTTACTTTCTTTAAGTTCAGTGCACACTTCAAATCAAGTGCTTGAGGATGATATGGAGAAAAGAAACTTAATTTTCAAGCTTATTTCACTGAAAGAGGAAGAAGAATATTCAAGTAGAGAAGAGACAACTGTGGAGATGGATGCAACAAAACTCAAGTTGAAGGAGCATATGTTTCACAAGCAGGTTAAAGAGATGTTGTACTCTTGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCTCTTGTATTAAGTGAGGAAGGGCAGGGCGTGTTACATTTAGTTGCTGCTCTCGGTTACGATTGGGCCATAAAACCAATCATAACTGCTGGAGTAAATATCAACTTCCGTGATGTGAGTGGATGGACAGCTCTACATTGGGCTGCATACTGTGGCCGGGAGCGAACAGTTGCGGTCCTTGTGTCCATGGGTGCAGCCACTGCAGCAGTGACAGATCCATGTCCAGAATTTCCTGAAGGTAGAACAGCTTCAGATCTTGCTTCTAGCAATGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATTATTAACTAGCCATCTTGAATTACTCACAATGGAGGAAAGTAAAGATGGTAGGAAAGAAATTTCAGGAATGAAAGCAGTGCAAACAGTTTCAGAGCGAACTGCGACACCTGTGCTTTATGGGGATATACCAGATGTTATCTGCCTTAAGGATTCTCTCAATGCTGTCCGGAATGCTACACAAGCTGCTGATCGAATACATCAAGTATACAGAATGCAGTCATTTCAGAGGAAACAGTTAGCTAAGCATGATCATGATGATGAATTTGGATTGTCAGATCAACAAGCTCTTTCCCTTTTAGCTTCTAGGATGAGCAAATCTGGACAAGGAGAGGGTTTAGCCAGTGCTGCTGCAATACAAATACAGAAAAAGTTTCGGGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAGAACAATCATATGGTCCGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGGCGCAAGGGCAGTGGTTTACGTGGATTTCGATCAGATACTGTGAACAAGGTCATCCCTGAGCAACCAATAGAATCTCCGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAAGCAAGGTTCCAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTTGAGGACTTCCGTCAAACCAAGGGAGATAATTTAAATTCGATGAATTCTGAAGAGGCAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTGCCTATAGCTTTCGATTGA 3912 0.4098 MAERGSYGLGPRLEKLMSAAKWVLLLQFASVFQRATCSSVLEEPAISVVEIFKQSLCIQAVNFLIAKYFGSCFSMLMLWLLDPLFGIALLELNSLLNCECDSIAIKCLSERHVLLFIILQIFSNYNLKPRIGGCALRKYVKFFAIIGCFISLQNHLTGHQSRAYGWIELLKCLKLLIHHEWFVATRYSRGGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKASMDLLFFSLWWEVLMCYTATMPMEKKMKIFRGEAIGCLNSEDMMHIVFVHYLDVKVFYLFSLFHAFTWAFRILNRARNVSLHDFVVVEVLTGVNKTNVGGKTYSGEATSDSQKGSSLSSGFPRNYGSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGSQSYHESKCLGNDCPIDKIDARSNSSYLMHPSSGDHGQFPVPGSEYIPLIQGHRAHDTASWDNAMEQSSGKHTAPSFVSSTSIPPSTSGNILEENNAVPGNLLGRKNVLIEEDRVSQALHSNWQHKDMFYLRFHLEQLCYLVVQDDVLNFLSGSRNQSYCNYGGAIPFGDDTGELPKWSLTQSLGLEFGSDYGTSLLGDVTDNAGSEILAEMFTFNGELKEKSVHQNISKQYTNTQSQPATKSNSDYEVAGEASINYTLTMKRGLLDGEESLKKVDSFSRWITKEFAGVDDLHTQSSPGISWNTDDCGDVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPMVTACNWSCMFGEVEVPAEVLANGILCCQAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNIDFTEFFTSSTEMVLHLRLVGLLSLSSVHTSNQVLEDDMEKRNLIFKLISLKEEEEYSSREETTVEMDATKLKLKEHMFHKQVKEMLYSWLLHKVTETGKGPLVLSEEGQGVLHLVAALGYDWAIKPIITAGVNINFRDVSGWTALHWAAYCGRERTVAVLVSMGAATAAVTDPCPEFPEGRTASDLASSNGHKGISGFLAESLLTSHLELLTMEESKDGRKEISGMKAVQTVSERTATPVLYGDIPDVICLKDSLNAVRNATQAADRIHQVYRMQSFQRKQLAKHDHDDEFGLSDQQALSLLASRMSKSGQGEGLASAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYRTIIWSVGILEKVILRWRRKGSGLRGFRSDTVNKVIPEQPIESPKEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGDNLNSMNSEEAVDGVEDLIDIDMLLDDENFLPIAFD 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01272 1303 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1127 1176 IPR027417 -
Vimu11g01272 1303 Pfam IQ calmodulin-binding motif 1128 1146 IPR000048 GO:0005515
Vimu11g01272 1303 Pfam IQ calmodulin-binding motif 1151 1170 IPR000048 GO:0005515
Vimu11g01272 1303 SUPERFAMILY Ankyrin repeat 911 1011 IPR036770 -
Vimu11g01272 1303 FunFam Calmodulin-binding transcription activator 2 710 806 - -
Vimu11g01272 1303 SUPERFAMILY E set domains 717 803 IPR014756 -
Vimu11g01272 1303 ProSiteProfiles IQ motif profile. 1149 1173 IPR000048 GO:0005515
Vimu11g01272 1303 Pfam CG-1 domain 189 282 IPR005559 GO:0003677
Vimu11g01272 1303 MobiDBLite consensus disorder prediction 451 484 - -
Vimu11g01272 1303 MobiDBLite consensus disorder prediction 330 372 - -
Vimu11g01272 1303 FunFam Calmodulin-binding transcription activator 2 1125 1173 - -
Vimu11g01272 1303 SMART iq_5 1148 1170 IPR000048 GO:0005515
Vimu11g01272 1303 SMART iq_5 1125 1147 IPR000048 GO:0005515
Vimu11g01272 1303 Gene3D Immunoglobulins 710 805 IPR013783 -
Vimu11g01272 1303 Gene3D - 894 1012 IPR036770 -
Vimu11g01272 1303 ProSiteProfiles Ankyrin repeat profile. 950 982 IPR002110 GO:0005515
Vimu11g01272 1303 ProSiteProfiles IQ motif profile. 1126 1155 IPR000048 GO:0005515
Vimu11g01272 1303 SMART ANK_2a 917 946 IPR002110 GO:0005515
Vimu11g01272 1303 SMART ANK_2a 950 979 IPR002110 GO:0005515
Vimu11g01272 1303 SMART CG_1_2 169 284 IPR005559 GO:0003677
Vimu11g01272 1303 ProSiteProfiles CG-1 DNA-binding domain profile. 152 289 IPR005559 GO:0003677
Vimu11g01272 1303 Gene3D - 1126 1173 - -
Vimu11g01272 1303 ProSiteProfiles Ankyrin repeat region circular profile. 950 975 - -
Vimu11g01272 1303 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 190 1265 - -
Vimu11g01272 1303 Pfam IPT/TIG domain 717 802 IPR002909 -
Vimu11g01272 1303 MobiDBLite consensus disorder prediction 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01272 Vimu-Chr11 14025229 14035443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01272 166 492 CAMTA Transcription Factor Family AT5G64220 33.934 2.21e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vimu11g01272 CG-1 8.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01272 K21596 - gmx:100795682 1597.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01272 11 14025229 14035443 Vimu2g00405 2 2312500 2323367 PCT