Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01261 TTGGGGGACAAGAGTGAGGAAGCAAAAAGGAGAACATGGAAGGTTGAAAATTTGGCCGACCTTGGAGTGGACCCCACAGATGGGACGGAAAGGTTGAGGTGGGGCTGGATTATATGGACAGTCTTTGTTGCTTCAGCTCTGTCAGCCAGATTTGAAGGTCCATGCCAAGAGGCTCAAAGAGGGTTAGTCACTTCCTGGCTTCTTCCTTCACTGCCTGAAAATATTGGTGCCAGAGTGGGCAGAAGTGTTACTTGCATCACCAGAGAAAGAATATGGTTGGAAAGAGAAGTTTCTCAGTTTATAGTGACATCTTCCAACTCATATTCCCTTTTGGTGGTTGGAGGACGATCTTCATCTAACTCTGGCAAGGGCAAGAGCAGTCAGTCCTCAGTCAAATATGGCTATAGCCTAGTCAAAGGGAAAGCAAACCATCCCATGGAGGACTACCATGTAGCAAAATTTGTCCAGTTCAATGGGCGAGAGCTTGGCCTTTTTGCTATATATGACGGGCATCTGGGAGACAGTGTACCGGCCTATTTACAAAAGCATCTGTTTCCTAATATCTTGAAAGAAGAGGACTTCTGGAATGATCCGTTCATGTCCATTTCTAATGCCTATGTAACAACAGATCAGGAAATTCTTTCTCATAGTCCTGATTTGGGACGAGGAGGATCAACTGCAGTGACTGCAATCCTCATAAATAATCAGAAATTATGGGTAGCCAATGTAGGAGATTCTCGAGCTGTTGTGTCAAGGGGAGGGGAGGCTGCACAGATGACAACTGATCATGAGCCCAATACTGAGAGGGGCAGCATTGAGACAAGAGGTGGCTTTGTGTCAAACATGCCAGGTGATGTTGCAAGAGTGAACGGGCAGCTAGCAGTTTCTCGAGCCTTTGGAGACAAAAACCTCAAAACACACTTGCGATCTGATCCTGACATTCAGTACGCTGATATCACCCCAGATGTTGAACTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGGAAATCAAGAAGCTGTTGATATTGCAAGAAGAATAAAGGATCCACAAAAAGCAGCCAAACAACTAGCCACTGAGGCATTGAACAGAGACAGTAAGGATGATATTTCCTGCATTGTAGTTCGTTTCAAGGGTTGA 1146 0.4511 MGDKSEEAKRRTWKVENLADLGVDPTDGTERLRWGWIIWTVFVASALSARFEGPCQEAQRGLVTSWLLPSLPENIGARVGRSVTCITRERIWLEREVSQFIVTSSNSYSLLVVGGRSSSNSGKGKSSQSSVKYGYSLVKGKANHPMEDYHVAKFVQFNGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKEEDFWNDPFMSISNAYVTTDQEILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVVSRGGEAAQMTTDHEPNTERGSIETRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYADITPDVELLILASDGLWKVMGNQEAVDIARRIKDPQKAAKQLATEALNRDSKDDISCIVVRFKG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01261 381 SMART PP2C_4 118 377 IPR001932 -
Vimu11g01261 381 SUPERFAMILY PP2C-like 128 380 IPR036457 -
Vimu11g01261 381 Gene3D - 115 381 IPR036457 -
Vimu11g01261 381 MobiDBLite consensus disorder prediction 252 275 - -
Vimu11g01261 381 ProSiteProfiles PPM-type phosphatase domain profile. 132 379 IPR001932 -
Vimu11g01261 381 FunFam Probable protein phosphatase 2C 39 123 380 - -
Vimu11g01261 381 Pfam Protein phosphatase 2C 141 372 IPR001932 -
Vimu11g01261 381 SMART PP2C_SIG_2 143 379 IPR001932 -
Vimu11g01261 381 CDD PP2Cc 131 379 IPR001932 -
Vimu11g01261 381 PANTHER PROTEIN PHOSPHATASE 123 379 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01261 Vimu-Chr11 13840670 13849768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01261 112 380 PP2C-type Phosphatase Gene Family AT1G22280 71.636 2.08e-137 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01261 K17506 - gmx:100776795 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01261 11 13840670 13849768 Vimu11g01261 11 13840670 13849768 ECH
Vimu11g01261 11 13840670 13849768 Vimu2g00406 2 2330067 2332713 PCT