Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01247 ATGGCTGAGTGGAAGAAGTTGAGAGTTTTGGGAGAAGGTTCATTTGGCAAAGTGTATCTTGTTCTTCTACGTTTTACAGGAGAACAAAATTCTGAAGTTTCACTCTCAGCATTGAAGACAAGCAATTTAATAAGGAGAGATTTATTATCGAACAAGGAAGTGATAGTCTACACTCACATGATTCTCAAGGGACTTTGTTGCATGCACGAAAAGGGAATTACTAGCGAAGAGGCAAATACTGATTTAGGAGAGATCAAATTCAGAGGGACACCCTATTACATGTCACCGGAATCAGTTAGAGGTTTTAAGGAAACAGCTTTAGATATATGGTCTTTGGGATGCATTGTTATTGAGATGAGCACTGGACTTCGAGAATGGTGGAACTTTGAATCCACAAACCAATTATTGTGCAAGCTTGCATTTTCTGAAGAAGTACCAAAGATACCAGATAAACTTACTTACGATTGCAAGGATTTTTTGAGAAAATGTTTGATGAATGATCCTCAACAAAGATGGACGGCTAAAATGCTTCTGAATCATCCTTTTATTCAAAACAAATACTCAACATCATCAGTTATGTAA 582 0.3694 MAEWKKLRVLGEGSFGKVYLVLLRFTGEQNSEVSLSALKTSNLIRRDLLSNKEVIVYTHMILKGLCCMHEKGITSEEANTDLGEIKFRGTPYYMSPESVRGFKETALDIWSLGCIVIEMSTGLREWWNFESTNQLLCKLAFSEEVPKIPDKLTYDCKDFLRKCLMNDPQQRWTAKMLLNHPFIQNKYSTSSVM 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01247 193 Gene3D Transferase(Phosphotransferase) domain 1 74 193 - -
Vimu11g01247 193 ProSitePatterns Protein kinases ATP-binding region signature. 10 39 IPR017441 GO:0005524
Vimu11g01247 193 SMART serkin_6 4 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01247 193 ProSiteProfiles Protein kinase domain profile. 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01247 193 SUPERFAMILY Protein kinase-like (PK-like) 3 187 IPR011009 -
Vimu11g01247 193 Pfam Protein kinase domain 86 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01247 193 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 84 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01247 Vimu-Chr11 13617665 13618498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01247 57 190 MAP Kinase Kinase Kinase AT5G55090 38.854 2.81e-29 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu11g01247 Pkinase 1.8e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01247 - - vra:106773110 347.436