Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01244 GTTATTTCTATATTGGAAGTGGACTATTCGTGTACTCCAGAAGAAGTGCAGCAGCATTTCCAGTCATGTGGAACCGTAAACCGAGTCACCATCCGAACTGATAAGTTTGGCCAACCAAAGGGCTATGCTTACGTAGAGTTTCTTGAAGTGCAGGCTGTGCAAGAAGCTCTTTCGCTGAATGAATCTGAACTACACGGGCGTCAATTGAAGGTTACTGCTAAGAGGACCAATATACCAGGGATGAAGCAATATCGTCCTCGCCGGCCTAATCCTTACCAGGGGTTTCGAGGCAGAGCCCCGTATGCACCTCCTTTTGCTTATGCTCCTTTTGGATATGGGTATGTTGTTTTCATTTCTTTCTTTTCCAGGGACATTTCATCTTGGACCTCAAAAACATCAAATCACGCCACAAATGTTTAG 420 0.45 VISILEVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVQAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYQGFRGRAPYAPPFAYAPFGYGYVVFISFFSRDISSWTSKTSNHATNV 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01244 139 CDD RRM_II_PABPs 7 72 - -
Vimu11g01244 139 Gene3D - 2 80 IPR012677 -
Vimu11g01244 139 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 6 88 - -
Vimu11g01244 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 76 IPR000504 GO:0003723
Vimu11g01244 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 70 IPR000504 GO:0003723
Vimu11g01244 139 SMART rrm1_1 1 72 IPR000504 GO:0003723
Vimu11g01244 139 SUPERFAMILY RNA-binding domain, RBD 7 98 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01244 Vimu-Chr11 13589541 13594396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01244 2 112 Eukaryotic Initiation Factors Gene Family AT2G36660 24.779 8.29e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01244 K14396 - qsa:O6P43_031629 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01244 11 13589541 13594396 Vimu2g00423 2 2429395 2440471 PCT