Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01241 ATGGCTTCTTTTGTTCCATATGATTCACCTGCTCCTAGTGATCATGAAACTAAACCTAACTCATCAAGAGTTGAAGCAACTGCAGTGGAGATAGAAGAAGAATGGAGTGTTCCAAAAGCAAAAGGAGAAAGTTCAGGTTGGAGAGAAGAGGAAGGTATGTCCTTGACATGGAAAAATGTATGGGTCACTGCTTCTATGGGAAACAATGGAAGCAAATCAATTCTGCAGGGTTTAACTGGTTATGCCAAGCCAGGCCAACTTTTGGCCATAATGGGTCCTTCTGGTTCTGGAAAGTCCACACTTCTTGATGCCTTAGCAGGGAGATTAGGTTCCGACACAAGGCAAACTGGGGAGATTCTTATCAATGGGAAGAAACAAGCCCTGGCATATGGAACATCAGCATATGTGACACAAGACGATACCTTGATGACAACCTTAACGGTTGGAGAAGCTGTGCACTATTCAGCTCAACTGCAGTTACCTGACACCATGTCAAAACAAGAGAAGAAAGAGAGAGCAGATTTTACAATCAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGATTGTTTGTCAAAGGAATAAGTGGGGGTCAGAAAAGGAGAGTGAGCATCTGCATTGAGATTCTTACACGACCAAGGCTACTTTTCCTTGATGAACCAACCAGTGGACTTGATAGTGCAGCTTCCTATTATGTCATGAAAAGAATCGCTACATTTGATAAAAGAGATGACGTTCGCCGAACTATTATTGCCTCAATCCACCAACCTAGTACTGAAGTTTTTCAACTTTTCGACAACCTTTGTCTTCTATCTTCAGGCAGAACTGTCTACTTTGGACCTGCTTCTGCTGCAAGTGCGTTTTTCGCTTCAAATGGTTTTCCTTGTCCTTCTCTCATGAATCCATCAGATCATATGCTGAAAACCATAAACAAGGATTTCGAACAGGACACTGAGTTAGGAGGGAAGGAAACAATACACACTGAAGAAGTGATTGAGATCCTTGTAAATTCGTACAAGTCATCTGAAATGAACCGAGAAGTTGAGAAAGAAGTAGCAGAACTTATTGAAAAGGACACCAGTTCAATAAACAAGAAGAGAAAGCATGCTGGCTTTATTAGTCAGTGCTTTTCTCTTACCAAACGATCGTCTGTTAACATGTATCGTGATCTCGGCTATTATTGGTTACGCCTTGCCATATATGTTGCATTGGCTATAAGTTTAGCCACTATTTTCTATGATTTAGGTACAAGCCACCGCTCAATTCAGGATAGAGGTTCATTTCTTATGTTTGTATCTTCATTCATCACCTTCATGACCATTGGCGGATTCCCTTCTTTTGTGGAGGATATGAAGGTGTTTGAACGTGAGAGACTAAATGGACATTACAGTGTGACTGCATATGTGATTGGGAACACCTTTTCATCAATCCCATTCTTGTTGTTGGTTTCCCTGATTCCTGGATCTATAGCCTATTACCTTCCTGGTCTTCAAAAAGGCTTTGAACACTTTGTATACTTCATCTGTTGTCTCTTTTCTTGTCTGATGTTGGTAGAGAGTCTTATGATGATAGTTGCAAGCATTGTCCCCAACTTTCTAATGGGCATCATAACTGGTGCTGGAATTCAAGGAATGATGATTCTGAGTGGTGGGTTCTTCAGATTGCCAAGTGATCTTCCAAAGCCATTTTGGAAATACCCAATGTTCTATTTTGCCTTCCATAGATATGCGTACCAAGGACTGTTCAAAAACGAGTTTGAAGGACTAAGATTCGCTTCAGATAATGTCGAAGATGGCTCCTACGTTACTGGTGAAGAAATTCTAACAAACACATGGGAAGTAAACATGAGTTACTCCAAGTGGGTTGATCTTGGAATCTTGCTGGGGATGATTTTTCTGTATCGAGTTCTCTTCTTGGTTAACATCAAAACTACTGAGAAGCTGAAACCGATAATTGTATCATTTTTGTCGTCAAGAACCTCTTCCAAGCGAACAAAGTCGATCATGCAGAATCCCAATGCCATTCCTCTTCAAGAAGTTCAAGTTACTTAA 2061 0.4076 MASFVPYDSPAPSDHETKPNSSRVEATAVEIEEEWSVPKAKGESSGWREEEGMSLTWKNVWVTASMGNNGSKSILQGLTGYAKPGQLLAIMGPSGSGKSTLLDALAGRLGSDTRQTGEILINGKKQALAYGTSAYVTQDDTLMTTLTVGEAVHYSAQLQLPDTMSKQEKKERADFTIREMGLQDAINTRIGGLFVKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIATFDKRDDVRRTIIASIHQPSTEVFQLFDNLCLLSSGRTVYFGPASAASAFFASNGFPCPSLMNPSDHMLKTINKDFEQDTELGGKETIHTEEVIEILVNSYKSSEMNREVEKEVAELIEKDTSSINKKRKHAGFISQCFSLTKRSSVNMYRDLGYYWLRLAIYVALAISLATIFYDLGTSHRSIQDRGSFLMFVSSFITFMTIGGFPSFVEDMKVFERERLNGHYSVTAYVIGNTFSSIPFLLLVSLIPGSIAYYLPGLQKGFEHFVYFICCLFSCLMLVESLMMIVASIVPNFLMGIITGAGIQGMMILSGGFFRLPSDLPKPFWKYPMFYFAFHRYAYQGLFKNEFEGLRFASDNVEDGSYVTGEEILTNTWEVNMSYSKWVDLGILLGMIFLYRVLFLVNIKTTEKLKPIIVSFLSSRTSSKRTKSIMQNPNAIPLQEVQVT 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01241 686 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 289 IPR027417 -
Vimu11g01241 686 MobiDBLite consensus disorder prediction 1 27 - -
Vimu11g01241 686 FunFam ABC transporter G family member 11 53 341 - -
Vimu11g01241 686 Pfam ABC-2 type transporter 258 371 IPR043926 GO:0140359
Vimu11g01241 686 ProSitePatterns ABC transporters family signature. 198 212 IPR017871 GO:0005524|GO:0016887
Vimu11g01241 686 Pfam ABC-2 type transporter 378 589 IPR013525 GO:0016020|GO:0140359
Vimu11g01241 686 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 40 663 - -
Vimu11g01241 686 Pfam ABC transporter 76 226 IPR003439 GO:0005524
Vimu11g01241 686 Gene3D - 54 292 IPR027417 -
Vimu11g01241 686 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 55 301 IPR003439 GO:0005524
Vimu11g01241 686 SMART AAA_5 84 278 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01241 Vimu-Chr11 13560560 13564947 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01241 85 262 Calmodulin-binding Proteins AT2G36910 29.189 1.05e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01241 K05681 - gmx:100813462 1117.06