Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01231 ATGATTTTACCTAAGCAATCTACAGTTTCAACACTCCGTACCTTAACATTTTTTCTTTGCCTTCTCTTAGTAGGTTGCCAAATCCTTGAAACCCCATCACCAGTACTATCGGATTCAATCCCACTAATCCCTGACATCTTAAACTTCATAGACCAAAGACTCGCTCTGGTCTTCCCCATTATTCAAGCCTTCAAGAACACAATAACCTCAGATCCTTTGGGAATAACAGCAACATGGGTTGGTCCAGATATATGCAACTACACAGGCTTCTACTGTGACAACCCACCAGATAACCTCACTGCCACAACCATTGCTTCAATTGATTTCAATGGTTTCCAACTCACTGCTCCAACACTCGATGGCTTCATCGATAAACTCCCTGACCTGGCTCTTTTCCATGCAAACAGTAACAGATTTTCTGGCACCATATCGCCAAAAATAGCGGGACTCAAGTTTCTATACGAACTTGATTTAAGTAACAACTTGTTCTCCGGGTTATTCCCCACGTCGGTCATCAACATCCCCACCTTATCCTTTTTGGATATTAGGTACAACTTTTTCACCGGCACGGTTCCCCCACAGATTTTCATGCAGACATTAGATGTTCTTTTCCTCAACAACAACAATTTCATGCTCACACTGCCCAACAATCTAGGAGACACACCCGTCGTTTATCTCACGTTGGCCAACAACAAATTCACCGGGCCCATTCCCCGCAGCATTAGAAAAGCCTCGTCCACGTTGATCGAAGTGCTGCTTTTGAACAACCTTTTAACGGGTTGTCTTCCCTACGACATCGGGTTCTTGGGAAACGTGACGTTGTTTGATGTTGGTGCGAACCTCTTAACTGGGCCAATACCTTGGTCCTTTGGGTGCTTGAAGAAAGTGGAGCAGCTTAACCTGGCAAGGAACCTTTTTTATGGACAGGTTCCGGAAGTGGTGTGTGCGTTGGGGAATTTGGCGAATCTTTCATTGTCTTACAATTATTTTACGAAAGTGGGACCTTTGTGCAAGAGGCTGATTCAAAGAGGGGTTCTGGATGTGAGGAAGAACTGTATTACTGGTCTTCCGGATCAGAGATCAGCGAAGGAGTGCATGGCGTTTTTTTCGATTCCGAAGTCTTGTCCGAACCCTGCATCGTTTAATATCATACCTTGTCAAATTCATTGGACGAAACCGCAAGAGAGAACTAAGAGGCATTTGCTTTCATATTCTGCTATTTCCAGGAATAGAGTGGTTTTGTAA 1245 0.441 MILPKQSTVSTLRTLTFFLCLLLVGCQILETPSPVLSDSIPLIPDILNFIDQRLALVFPIIQAFKNTITSDPLGITATWVGPDICNYTGFYCDNPPDNLTATTIASIDFNGFQLTAPTLDGFIDKLPDLALFHANSNRFSGTISPKIAGLKFLYELDLSNNLFSGLFPTSVINIPTLSFLDIRYNFFTGTVPPQIFMQTLDVLFLNNNNFMLTLPNNLGDTPVVYLTLANNKFTGPIPRSIRKASSTLIEVLLLNNLLTGCLPYDIGFLGNVTLFDVGANLLTGPIPWSFGCLKKVEQLNLARNLFYGQVPEVVCALGNLANLSLSYNYFTKVGPLCKRLIQRGVLDVRKNCITGLPDQRSAKECMAFFSIPKSCPNPASFNIIPCQIHWTKPQERTKRHLLSYSAISRNRVVL 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01231 414 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vimu11g01231 414 Gene3D Ribonuclease Inhibitor 218 405 IPR032675 -
Vimu11g01231 414 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 44 392 - -
Vimu11g01231 414 SUPERFAMILY L domain-like 64 355 - -
Vimu11g01231 414 Gene3D Ribonuclease Inhibitor 60 217 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01231 Vimu-Chr11 13408288 13409532 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01231 49 372 Leucine-rich Repeat extension Gene Families AT3G24480 48.457 3.06e-100 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01231 - - gmx:100813314 686.411