LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g01229	ATGGGAACAACAACCAAAACCATTTTCTCCTCTGTTTTACTCTGCTCACTCCTACTTCAGCTTTACTTTTCAGAAGGAGTAGTAGCACAAGAGGTGGTGGCAAAATCAGAGAGCGAAGCATTAGGGGAAACAGAGAAAAGAGAAACACTAGAAATTATAATAGGTGGCGGAGGTTCCCCTGCTCCTTCCCCTGAAGCTCCATGTCCCCCTCCCCCACCCAAACTTAACCGTTTAGACAGAGCACGTCGTGCGCTTCTCAATTTCAAAAGCCTCATCGATGACCCAAACTGTTACACGCAAAATTGGGTAGACGGCACTGATACGTGTGACTTCAACGGGATACGATGCGCCACATATCCAACGGACAAACAGACAGCAGTTGCAGGAGTGGACTTAAACGGAGCAAGAGTGACGGGTCAAAACGGGTGCGCTTTGCCCCTCTCATCTCTCTTGGGCCAGAACCAAATACCCGAGCTCACATTCTTCCACGTCAACTCCAACGGCTTCGCCGGCTCTGTCCCCACCGATGTCATCAATTTCCCCTACTTCTTCGAGCTCGACCTCAGTAACAACAAAGTCAAAGGCCAGTTTCCCCTCGACGCCATTAAGTCAAACCTCCTAGTCTTCCTTGACCTCCGCTTCAACGAACTCACCGGCCCAATTCCCTACCAACTCTTCCAGAGGGATCTCGACGTCATCTTCATCAACAACAACCACTTCACACAGTGCCTCCCCCAGAATTTCGGCTCCACGCCGGCCCGCTACCTCACTTTCGCCAACAATAACCTCACCGGCCCGATTCCCAAGAGCGTCGGTTACGCCCCCAACCTCACCGAAGTTCTCTTCCTCGGGAACCAGTTCGACGGCTGCTTGCCCATTGAAATCGGAAACCTTAAAAAAGCTGTCGTCTTTGATGTGAGTAAGAATTTGCTCACCGGCCCAATCCCTCTCTCCTTCGGGTGCTTGAAAAGCATTCAGTATCTGAATTTGGCGCACAACAAATTCTACGGCTGTGTTCCCGACAACGTTTGTCAAATTCCTTCTCTCCGCAACAATGGGAATCTCTCCTTGGCCGACAATTACTTCAACGAGGTTGGCCCTTCCTGTTGGAGTTTGATCAAGTCCAAGGTTTTGGATGTCTCAAAGAATTGCATTCCTGGGCTCCCAAACCAAAGGTCACCCACCGAATGCTATTATTTTTACAAGACGAAGAAGACGTGTCCGAATCCGAGTTCTTTCTACACAGTGCCGTGTAAATCGCACTGGGGACACCCCAGTTCCGAAACCAATGTTCCAACCTCTGCGCCGGTGACTTACAAGACTCTAAAACCGCATCGTTTGAGATTATGA	1350	0.4993	MGTTTKTIFSSVLLCSLLLQLYFSEGVVAQEVVAKSESEALGETEKRETLEIIIGGGGSPAPSPEAPCPPPPPKLNRLDRARRALLNFKSLIDDPNCYTQNWVDGTDTCDFNGIRCATYPTDKQTAVAGVDLNGARVTGQNGCALPLSSLLGQNQIPELTFFHVNSNGFAGSVPTDVINFPYFFELDLSNNKVKGQFPLDAIKSNLLVFLDLRFNELTGPIPYQLFQRDLDVIFINNNHFTQCLPQNFGSTPARYLTFANNNLTGPIPKSVGYAPNLTEVLFLGNQFDGCLPIEIGNLKKAVVFDVSKNLLTGPIPLSFGCLKSIQYLNLAHNKFYGCVPDNVCQIPSLRNNGNLSLADNYFNEVGPSCWSLIKSKVLDVSKNCIPGLPNQRSPTECYYFYKTKKTCPNPSSFYTVPCKSHWGHPSSETNVPTSAPVTYKTLKPHRLRL	449

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g01229	449	Pfam	Leucine rich repeat N-terminal domain	80	116	IPR013210	-
	Vimu11g01229	449	Gene3D	Ribonuclease Inhibitor	252	405	IPR032675	-
	Vimu11g01229	449	PANTHER	LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED	41	426	-	-
	Vimu11g01229	449	SUPERFAMILY	L domain-like	81	385	-	-
	Vimu11g01229	449	Gene3D	Ribonuclease Inhibitor	78	251	IPR032675	-
	Vimu11g01229	449	FunFam	Leucine-rich repeat receptor protein kinase EMS1	244	342	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g01229	Vimu-Chr11	13402089	13403438	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu11g01229	73	400	Leucine-rich Repeat extension Gene Families	AT4G13340	42.216	6.58e-75	247

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g01229	-		-	ccaj:109818312	647.506