Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01221 ATGCAAGGTCAAAGGAGAACTGTTGGATCGTTCCCAACAATTATTAGTATGAGGCAAGGGCCCAGTTCTCGTGGCACTGATACAAATCATCAGTCTTCCTTGAATCATGTGCAAAATGCTGTAGATTCCCGATTTTCAGATTATAGGGGATCTTTTGGTGAGGCTGCATATTTATGTAGTACTAGTCATGATATTCAAAGCTTCAGTTGTTGGAATTTAGGGGAATCTAGTTCTAGACTGAATCTGACCAACCAAAGCAATGTGGAAGGTCTAAAATCAGAACATGGTTTGTCTTCTTCATATAATGCTACTAGTGAGGATGATCTCGAGTATGAGGAAAGACAATTTGAACCAAATAGAATAATTTTTCCCGTTAGCTCAAGTAATAACCTACATGGCAATCAATCTAGAGTTTATCCTCCCTTTTGGCAAGGCTCTAGTTCTAATCATGTTACCCAGCATGTTAGTCTAGACATGGGGCATGTTGCCAATGCTTCTGACCGTGGGAAGGGAAAGAAAGCTAGTAGTAGTGTTGATGACTATAATAGTAGTGGAATAGATAGAGAAAAGACATTATTTGGCAGTGCATCATGTAATTACATAGGACCTTCATCTGAAAACTCTGGATCCATGGCTTGGGTTGAAGGTGATAGTTCAAGTTCTCTAGTTGATTGGGGTCCTTCCTGCAAGAGAAAAGCTCTTGAAGGTAGTTCTAGGCAACTGTGCTCAGGAGGAAGCTCAAGCACGCTTGCACAATCTGAAAATGATTATTGGCCTATTGGTCCTGCTGATCCTAATACTTCTAGCAACTTAAGTGATGTTACAACTTTGGAGGATATTCCTGTTACCAGTCCTCCATTACTGCAGAATGTAAGAAATGAAGTGAGACAAAAAGCTTCCAATGCATTTCCTTTGATAAGTATTGCAGAAAATCTAGAAAGGCCTGTAAGAAACTTCAATAGAAGAATGAGCCAACTACAGGATCAGGAATCTATACATGTCAATTTACCATCAATAGGGTGTTTTAGGCTTCAAAATCATTCTTCGCTGAATCAAATACCCAGCTCTCAGTCACTTAATGATTCATTGGAATTGAGGTTAATAGCTGAAGTAACAACTGCTAATTCTGGTACTTCTTTAAATCAATCACCTGCCCAACGCATCCATTCTTTTCCTTTGAGTAGAATCGCCAATCCTAGGTGGGGTAGATCTTCATTTTCTTATAACTCTGGAGATAGAGTTATTCGAGAAGATTTTAATTTGAGAGTGTTTCCCAGAGATAGTACTGAGCACCCTATGAATGCACCTGCATCTTCACAATACGAACCTACACGTTGGCATACACCTTCTGCTAATGTGAACTTTTCTGAAGGTGTACCTCCTCGATCTTGGATTGGATCTAGTTCAAATGCCCACCCTTCACATAACTCTGTCTGGAATTTTAATCATGAAGTCCCAATTGAAAATGTGCAGAGTGTGTCAGAGTTCAATCTTTGGCCCCTTTTTCCATCAATTTGCTCTGCATCTGGTATTCATAATGGTCATTCTACTCCATCTTCTTCTGGTCCTCCCTCGTTTACCCAGGGTTCTGGCAACAATCAATCCTATCTAAGAACAACATTGTTAACGGAAAGAAGAGGTGCTGAAGTTCTCTCTAGTCCCCATTCATTGCAAGCACTAACCTTCGGCAATGAGGGGAGACGACAACTACTATCTGAGATTCGCCAGGTCTTGATGGCAATTCAAAGGGGTGAGAACTTACGAGCTGAGGGAGAAAGAGTCAATCAATGGGAGGATGAAATTGAGATCAAAAGTCAATGTCCGATAGTCACTCTTGAGGGAAAGACTGCTGTTGAAGGGAAGGATCTATGGTCTGGGCAGTTGGAGTTTCCTCCTCTTGATTATGCGTTATTTGACCCTTTCCTATATCATGGCATGGCTGAAATACACGACAGACATAGAGAAATGCGCCTTGATGTTGACAACATGTCTTATGAGGAATTGTTGGCATTAGAGGAGCGTATAGGAGATGTTAGCACTGGATTGAGTGAGGATGTCATTGTTAAGTCGATGAAGCAACGACTTTACACAGCACTCATGACACAGTCTTGTACAGGTTTGGAACCTTGTTGCATTTGTCAGGATGAATTTGGTGATGGAGAGAATGTTGGATCACTGGATTGTGGACATGAGTTTCACAGTGCCTGCATCAAGCAGTGGCTAATGCAGAAGAACATCTGCCCCATTTGCAAAGTAGTAGCCTTAGCTACTACTTGA 2277 0.4119 MQGQRRTVGSFPTIISMRQGPSSRGTDTNHQSSLNHVQNAVDSRFSDYRGSFGEAAYLCSTSHDIQSFSCWNLGESSSRLNLTNQSNVEGLKSEHGLSSSYNATSEDDLEYEERQFEPNRIIFPVSSSNNLHGNQSRVYPPFWQGSSSNHVTQHVSLDMGHVANASDRGKGKKASSSVDDYNSSGIDREKTLFGSASCNYIGPSSENSGSMAWVEGDSSSSLVDWGPSCKRKALEGSSRQLCSGGSSSTLAQSENDYWPIGPADPNTSSNLSDVTTLEDIPVTSPPLLQNVRNEVRQKASNAFPLISIAENLERPVRNFNRRMSQLQDQESIHVNLPSIGCFRLQNHSSLNQIPSSQSLNDSLELRLIAEVTTANSGTSLNQSPAQRIHSFPLSRIANPRWGRSSFSYNSGDRVIREDFNLRVFPRDSTEHPMNAPASSQYEPTRWHTPSANVNFSEGVPPRSWIGSSSNAHPSHNSVWNFNHEVPIENVQSVSEFNLWPLFPSICSASGIHNGHSTPSSSGPPSFTQGSGNNQSYLRTTLLTERRGAEVLSSPHSLQALTFGNEGRRQLLSEIRQVLMAIQRGENLRAEGERVNQWEDEIEIKSQCPIVTLEGKTAVEGKDLWSGQLEFPPLDYALFDPFLYHGMAEIHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIVKSMKQRLYTALMTQSCTGLEPCCICQDEFGDGENVGSLDCGHEFHSACIKQWLMQKNICPICKVVALATT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01221 758 MobiDBLite consensus disorder prediction 427 446 - -
Vimu11g01221 758 Pfam Ring finger domain 710 751 IPR001841 -
Vimu11g01221 758 ProSiteProfiles Zinc finger RING-type profile. 710 751 IPR001841 -
Vimu11g01221 758 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 225 755 IPR045191 GO:0061630
Vimu11g01221 758 MobiDBLite consensus disorder prediction 1 32 - -
Vimu11g01221 758 SUPERFAMILY RING/U-box 709 754 - -
Vimu11g01221 758 Coils Coil 309 329 - -
Vimu11g01221 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 675 754 IPR013083 -
Vimu11g01221 758 MobiDBLite consensus disorder prediction 513 533 - -
Vimu11g01221 758 FunFam E3 ubiquitin-protein ligase MBR2 677 755 - -
Vimu11g01221 758 MobiDBLite consensus disorder prediction 432 446 - -
Vimu11g01221 758 SMART ring_2 710 750 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01221 Vimu-Chr11 13320228 13327018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01221 1 757 C3H Transcription Factor Family AT2G15530 33.911 2.59e-95 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01221 - K19041 gmx:100809024 1072