Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01220 ATGGTCATCATGTCAGAAGATAAAAGTTTGCATGATACGACGAAGTTCTTGTGGGAAAACACGAATTCAGAAAAGCAGAAGAATGAAAAGGTGGAAGGTGTGACGAAGAAGAAGCGAAATGGAGAGCTGAACAAAGTTAGCAGTGCAGAAGGAAATGGTGAAAAGAGTCGCGAATCTGATCATGAAATGCATATATGGACTGAGAGAGAAAGGAGAAAAAAAATGAAAAACATGTTCGCTAGTCTTCATGCATTGCTTCCTCATCTTCCTTCTAAGGCGGATAAATCAACGGTCGTGGATGAAGCAGTGAGCTACATCAAAAATCTTGAGAGAACCCTGGAAAAGCTTCAGAAGCAGAAAGAAGAAAAGGTCCGATGTGGCTATGAGTCATCACCGTCCATGTTCACTGCTCAGGGACTTTCTTCTAATTACCACTTTTCCAACGCGATTATGGGGCAGCAGCAGCAGCAGCAGCAGCCCGTAGCTTTTGATAAAACATGGGCCTCTTCAAATATGGTCTTGAATGTTTGTGGAGATGAGGCCCAATTCTGCATTTGCGCGGCCCATAAACCAGGTCTGGTGTCCACCATAGTTTTTGTGCTTGATAAATACAAGATAGAGCTTGTATATGCCCACATTTCCTGCATTGGGAATGGAAATGCAATCATGATTCAAGCTCACGGAAAACGAGCTTCACATCAGTTCCTGGATGCAAATTCAGTGGAAGAAATTTACAGGCAAGCTGCCGGAGAGATTCTGCTATGGATCGCTTAA 774 0.4328 MVIMSEDKSLHDTTKFLWENTNSEKQKNEKVEGVTKKKRNGELNKVSSAEGNGEKSRESDHEMHIWTERERRKKMKNMFASLHALLPHLPSKADKSTVVDEAVSYIKNLERTLEKLQKQKEEKVRCGYESSPSMFTAQGLSSNYHFSNAIMGQQQQQQQPVAFDKTWASSNMVLNVCGDEAQFCICAAHKPGLVSTIVFVLDKYKIELVYAHISCIGNGNAIMIQAHGKRASHQFLDANSVEEIYRQAAGEILLWIA 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01220 257 CDD bHLH_AtbHLH_like 64 117 IPR045239 -
Vimu11g01220 257 Pfam Helix-loop-helix DNA-binding domain 64 110 IPR011598 GO:0046983
Vimu11g01220 257 Gene3D - 51 125 IPR036638 GO:0046983
Vimu11g01220 257 MobiDBLite consensus disorder prediction 22 44 - -
Vimu11g01220 257 Coils Coil 99 126 - -
Vimu11g01220 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 59 109 IPR011598 GO:0046983
Vimu11g01220 257 SMART finulus 67 115 IPR011598 GO:0046983
Vimu11g01220 257 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 24 256 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vimu11g01220 257 MobiDBLite consensus disorder prediction 17 62 - -
Vimu11g01220 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 121 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01220 Vimu-Chr11 13300029 13301122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01220 60 257 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.865 1.35e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g01220 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01220 - - pvu:PHAVU_003G048000g 364.385