Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01219 ATGGATTTCTTATTGGAAAATAATACAGATACTTCTTCTAGTTCTAATCGTTCAAATGAAATTAAAACAAACCAAAACCTTGTTGTGAATACGATGTCGAATGAAGATGTTGTTGATGAAAATGAGAAGAAAATTATTACTAGTGGTGAAGAATCCTACGATCCGGAAACTAATAATGAAATGCATCTATCCATCGAAAGAGGCCGTAGAAAGAAAATGAAAGAAATGTTCAACGATCTTAGTGCTTTACTTCCTCAACTTCCTTCAAAGGCTGATAAAGCAACCATAGTGAAGGAAGCAGTGGACTACATAAAAGTTCTGCAGGAAACTCTGGAAAAGCTAGAGAGAAAGAAAGAAGAGAGGGCACAACATGTTCTGCAACAAATTATGGGAACGAGTTGTAGTGCAGGTTCAGTGTCTCAGAAGCAAAAAGGTTTTGATAAAACTTGGGCTGCTTCAAACATGGTCCTCAACATTCGTGGAAATGAAGCTCAATTCTCGATTTGCTCAGTGCATAAGCCAGGACTCATGACCATGATTGCTTCTGTTCTGGAAAAGCACAACATAGAACTCATTTCTGCAACCATTTCGGCCAATGGAAATGGAAGTACATGCATGATTCAAGTCCATGGAAAACAAGCTTCGGATGCAAATTCAATGGAGGAAACATACAGAAAAGCTGCTGAAGAAATTATGCCATGGATCTCTTAA 711 0.3797 MDFLLENNTDTSSSSNRSNEIKTNQNLVVNTMSNEDVVDENEKKIITSGEESYDPETNNEMHLSIERGRRKKMKEMFNDLSALLPQLPSKADKATIVKEAVDYIKVLQETLEKLERKKEERAQHVLQQIMGTSCSAGSVSQKQKGFDKTWAASNMVLNIRGNEAQFSICSVHKPGLMTMIASVLEKHNIELISATISANGNGSTCMIQVHGKQASDANSMEETYRKAAEEIMPWIS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01219 236 CDD bHLH_AtbHLH_like 62 115 IPR045239 -
Vimu11g01219 236 SMART finulus 63 113 IPR011598 GO:0046983
Vimu11g01219 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 107 IPR011598 GO:0046983
Vimu11g01219 236 Pfam Helix-loop-helix DNA-binding domain 61 108 IPR011598 GO:0046983
Vimu11g01219 236 Coils Coil 97 127 - -
Vimu11g01219 236 Gene3D - 49 133 IPR036638 GO:0046983
Vimu11g01219 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 133 IPR036638 GO:0046983
Vimu11g01219 236 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 28 235 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vimu11g01219 236 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01219 Vimu-Chr11 13288188 13292818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01219 146 208 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 46.875 4.15e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g01219 HLH 4.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01219 - - vum:124823917 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01219 11 13288188 13292818 Vimu11g01219 11 13288188 13292818 ECH