Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01211 ATGGCTACCCCTAGTAAATCAACACAAATAACATCTTCTGACACTTTTGAACAGAAGGGTAAGACTATGACTGAGTCAAATGCAGCCATTCTTCAATGTCCTTTAAACCAGCAACTCCATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAGAATTGTCCTGTTCCAAGTGATGTACGGCCTGAAGATGTAGCAGGTAACATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGCTGTTTTCTGCTTATGGGGATTTCAATTCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGATGTTCCAAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTCGATATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATTATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTTCACATCCTTGGCTTTGTGCCTCCCTCAAAGGCTTTAGTGCCACCCCGTGGAGGTCCAATTGAGCTTGCTGGATATTTGATGGGGTGCCATATCAATGAAAATTCTGAAGTATTAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAACTATTACAACTCAAGGGAATTTTCATTAGTGTCACAATCACTGTCTGAATACAACTGTGGCACATCGAACATGACATGCTTGCCGACAACTATGAGATCACACAGCCTTCCATCTGTATTCAATGATGTTCAAGGAGGGTCTATGATGCCTTCTGGTGATCATAATGAATGCCAGTTATGGGTACAACCTGGGGATTTAAATGGCCTCAAAGGGCAGCTGGTAAGATTGATTGAACATTTTGGAGGATGCATGCCTCTTGCCCGAGTTCCGGCAGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTTGCTGAATATGGGGCAATAAAGTTGGTCAATCTTTTTAAGAAGATGGGCGATGCCTTGGCTGTGGAAGGGAAAGGGAATCGGAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCTCCCCCTCTCTCTTTGGCAAAGAAAGATAAGAAGGGGAAGGGAACCCAGGAAGAGAATGTGAATGTTGTGACTGGTGGGTGCTCTTCAGATGAGTTTTCAGATGAGGAAAGAGTAGTCATAGAAGAACATGACGAAAGAAGTTGCACAGGCAAGGGCAATCAGGAGAGTGCAGCCAAATGTGAAGTCGATGACTGTGTTATTGAGCACTTCAAGTATGAGCTGCAAGAGATTCTAGTAAGCTATTCTTGTCGAATATTCCTTGGTTGTTTTGAGGCTATATACCAGCAGCGATACAAGAAACAGCTAGAATATCAGAGATTTGGTGTGGACAAGTTGGAGGATTTGTTTGAGAAAGTGAGTGATGTGGTGGTATTGCATGAGGAACCAGTAAGCAGGAAGAAGTTCCTGGCTGCTGTGGGTGGTTAG 1485 0.4323 MATPSKSTQITSSDTFEQKGKTMTESNAAILQCPLNQQLHSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMLFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGFVPPSKALVPPRGGPIELAGYLMGCHINENSEVLNEEEAIVYRGMSQNYYNSREFSLVSQSLSEYNCGTSNMTCLPTTMRSHSLPSVFNDVQGGSMMPSGDHNECQLWVQPGDLNGLKGQLVRLIEHFGGCMPLARVPAEYQKIYGRPLYVAEYGAIKLVNLFKKMGDALAVEGKGNRKFVYLRNWKAGPSAPPLSLAKKDKKGKGTQEENVNVVTGGCSSDEFSDEERVVIEEHDERSCTGKGNQESAAKCEVDDCVIEHFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVDKLEDLFEKVSDVVVLHEEPVSRKKFLAAVGG 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01211 494 CDD LOTUS 420 482 - -
Vimu11g01211 494 MobiDBLite consensus disorder prediction 1 21 - -
Vimu11g01211 494 CDD PIN_limkain_b1_N_like 46 161 - -
Vimu11g01211 494 ProSiteProfiles OST-type HTH domain profile. 274 346 IPR025605 -
Vimu11g01211 494 Pfam OST-HTH/LOTUS domain 420 482 IPR025605 -
Vimu11g01211 494 Pfam OST-HTH/LOTUS domain 277 342 IPR025605 -
Vimu11g01211 494 Gene3D - 417 486 IPR041966 -
Vimu11g01211 494 Gene3D - 274 343 IPR041966 -
Vimu11g01211 494 ProSiteProfiles OST-type HTH domain profile. 419 493 IPR025605 -
Vimu11g01211 494 Gene3D - 43 161 - -
Vimu11g01211 494 CDD LOTUS 275 344 - -
Vimu11g01211 494 PANTHER LIMKAIN B LKAP 26 162 IPR024768 GO:0005777|GO:0010468
Vimu11g01211 494 Pfam NYN domain 46 160 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01211 Vimu-Chr11 13193719 13195317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01211 43 171 C2H2 Transcription Factor Family AT5G61190 41.912 4.97e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01211 - - gmx:100818186 902.894