Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01202 ATGAACTTCAGGAACTACGATCATAATAACCCCACTTGGGATGCCATGCATGGGAAGACACCGGCGGCAAATGTTGGTTCTCTACTGAGACAGCCATCATCAGTATACTCCCTTACATTTGATGAGTTTCAGAGCACCATGGGTGGGGTTGGGAAGGAATTTGGGTCCATGAACATGGATGAACTCTTGAAGAACATTTGGACAGCTGAAGAGACTCAGGCCTTGACATTTTCAGCTGGTACAGGAGAAGGCCACAACCTTAACTCAATTAGTGGTGGATTGCAAAGACAGGGTTCTTTGACATTGCCAAGGACTCTTAGTCAGAAAACAGTAGATGAAGTTTGGAGGGACTTGATCAAAGAAAGTGGTGGGGCCAATGATGGGAATGGCAATGGTGGTTCATCCATTCCTCAAAGGCAACCAACATTGGGAGAAATGACTTTAGAGGAGTTTTTGGTGAGAGCTGGGGTGGTGAGAGAAGATGTGCCTCAACAACAACAAATTGGAAAACCAAATAACAATGGATGGTTTGGTAACTTTCCTAGACCAAACAATAACAATGGCCTACTTCTTGGTTTCCAACAACCAAATAGAAGTAATGGGAATATGGGTGAGAGGGTGGTGGAGACCAACAATAACTTAGCTCCCAAACAACCTCCTCCTCAATCACTAAACTCAAACCACTCTCACCGACCAACACAACAGCCACCACTTTTTCCAAAGCCTGCAAATTTAGCTTTTGCTGCTCCTATGCATTTGTTCAACAGTGCTCCACTTGCTAGCCCTGGCAGAAGAGGAGGGTTGATCGAGCATTCATTGAATGCTGGACTGGTTGGTTTAGCCTCGGGTAATCCAGAGGCTTCTCCCTCAAGAAAAATATCATCAGATGTAATTACAAGAAGTAATGTAGACAACTCTTCACTGTCGCCAGTTCATTATTCAATCAACAGGGGAAGAAAATGCAGTGCTATAGAGAAAGTGGTTGAGAGAAGACAAAGGAGAATGATAAAAAATAGAGAATCAGCAGCCAGATCACGGGCTCGTAAGCAGGCCTACACTTTCGAACTAGAAGCTGAAGTTGCAAAACTTAAGGAAATAAACAGAGAATTGCAAAGAAAACAGGCAGAAATTAAGGAAATGCAGAAAAACAAGGATTCGGACCCTGCATGCCAGCCAAGGGTAAGTAAAATACAATGCTTGAGAAGGACACTTACAGGACCATGGTAG 1227 0.4377 MNFRNYDHNNPTWDAMHGKTPAANVGSLLRQPSSVYSLTFDEFQSTMGGVGKEFGSMNMDELLKNIWTAEETQALTFSAGTGEGHNLNSISGGLQRQGSLTLPRTLSQKTVDEVWRDLIKESGGANDGNGNGGSSIPQRQPTLGEMTLEEFLVRAGVVREDVPQQQQIGKPNNNGWFGNFPRPNNNNGLLLGFQQPNRSNGNMGERVVETNNNLAPKQPPPQSLNSNHSHRPTQQPPLFPKPANLAFAAPMHLFNSAPLASPGRRGGLIEHSLNAGLVGLASGNPEASPSRKISSDVITRSNVDNSSLSPVHYSINRGRKCSAIEKVVERRQRRMIKNRESAARSRARKQAYTFELEAEVAKLKEINRELQRKQAEIKEMQKNKDSDPACQPRVSKIQCLRRTLTGPW 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01202 408 MobiDBLite consensus disorder prediction 165 183 - -
Vimu11g01202 408 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 30 408 IPR043452 GO:0003700|GO:0045893
Vimu11g01202 408 Gene3D - 328 386 - -
Vimu11g01202 408 MobiDBLite consensus disorder prediction 127 142 - -
Vimu11g01202 408 MobiDBLite consensus disorder prediction 121 142 - -
Vimu11g01202 408 MobiDBLite consensus disorder prediction 211 234 - -
Vimu11g01202 408 Coils Coil 353 383 - -
Vimu11g01202 408 MobiDBLite consensus disorder prediction 164 183 - -
Vimu11g01202 408 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 333 348 IPR004827 GO:0003700|GO:0006355
Vimu11g01202 408 SUPERFAMILY Leucine zipper domain 330 378 IPR046347 GO:0003700|GO:0006355
Vimu11g01202 408 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 328 385 - -
Vimu11g01202 408 CDD bZIP_plant_BZIP46 330 384 - -
Vimu11g01202 408 MobiDBLite consensus disorder prediction 211 242 - -
Vimu11g01202 408 SMART brlzneu 326 390 IPR004827 GO:0003700|GO:0006355
Vimu11g01202 408 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 328 379 IPR004827 GO:0003700|GO:0006355
Vimu11g01202 408 Pfam bZIP transcription factor 330 383 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01202 Vimu-Chr11 13101579 13103533 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01202 16 408 bZIP Transcription Factor Family AT1G49720 47.356 7.46e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu11g01202 bZIP_1 2.1e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01202 K14432 - gmx:100776600 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01202 11 13101579 13103533 Vimu11g01202 11 13101579 13103533 ECH