Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01190 ATGTCTTCCTCTTCCTCCTTCTCCCCCGCCACTCTCACCCCTGAGCAAGAACTCTCTGTCATCGTCGCCGCTCTCACCAACGTCGTCGCCGGCTCCACTTCCTCCGACGCCGTCTCTCTCCCGGACTTCCGCCTCCCCAACGCCTCCCAGCCTCTCGCCGGAAACACCCTCTCGCCGCCCACTATGGACACGTGTCGTGAGTGCAACATCGCTGGCTGTTTGGGCTGCAATTTCTTCCCCGAGGAGAAAAAGAAACAGAAAAGGGTGAAGAAGAAATACAGAGGCGTGAGGCAGAGGCCATGGGGTAAATGGGCGGCCGAGATTCGCGACCCACGCCGTGCGGCACGGGTCTGGCTGGGAACTTTCAACACGGCCGAGGATGCTGCCCGGGCCTACGACAAGGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCTTAGTGGATGAGTCCTTGAGCATGCAGCAGAGCAAGCCAGAGAGGGTTGCAGCTGAAGAACAAATAAAGAACGAGAATCTGAACCAGGGCATGGAAATGGAGACGATGGAATTCGGTAACAAAGATACCGAATTCTGGGACAGGATTGGAGAAACTGATTTTCATCAGCTGATGATGATGATGGATTTCACTGGAGATTCTTCCGACTCTGCCACCGGGAACACTCTTAGTTCCTGA 684 0.5629 MSSSSSFSPATLTPEQELSVIVAALTNVVAGSTSSDAVSLPDFRLPNASQPLAGNTLSPPTMDTCRECNIAGCLGCNFFPEEKKKQKRVKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEDAARAYDKAAIEFRGPRAKLNFPLVDESLSMQQSKPERVAAEEQIKNENLNQGMEMETMEFGNKDTEFWDRIGETDFHQLMMMMDFTGDSSDSATGNTLSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01190 227 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Vimu11g01190 227 FunFam Ethylene-responsive transcription factor 2 91 150 - -
Vimu11g01190 227 CDD AP2 93 149 IPR001471 GO:0003700|GO:0006355
Vimu11g01190 227 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Vimu11g01190 227 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Vimu11g01190 227 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Vimu11g01190 227 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Vimu11g01190 227 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Vimu11g01190 227 PANTHER DNA-BINDING DOMAIN 64 170 IPR044808 GO:0003700|GO:0009873
Vimu11g01190 227 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01190 Vimu-Chr11 12885861 12887962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01190 12 157 AP2-EREBP Transcription Factor Family AT4G34410 48.913 2.09e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vimu11g01190 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01190 - - gmx:100820426 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01190 11 12885861 12887962 Vimu11g01190 11 12885861 12887962 ECH