Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01175 ATGGGAGTTTGCACATCGAAGCCGCAGAAGGCGAACCCTTACGCGCTTCGCCAAGCGGAAGCCGAAGCCGACCCTTCGCAAATCCCAAAAGCCCCACTTAGTCCCGCCGCAGCCGAGAACCACCGCCGGAAAGATGAAGTTGCCGCCGGGAAACAGTCTCCGTTCTTCCCGTTCTACAGCCCGAGCCCCGCGCGCTTCCTGAAGAAGTCTCCAGCGCCGTCGGGAGGGAGCAGGAGCGCGGCCTCCACGCCGAGGAGGTTCTTCCGGAGGCCGTTCCCTCCGCCGTCGCCGGCTAAGCACATAAGGGCTGTGCTGGCGCGGCGACAGGGAAAGAAGGCGGCGACAGCTGCGATATCGGAGGAGGGGGAGGATGGCGGTGGAGCTGCGACGGATTTGGATAAGAGGTTTGGATTCTCCAAGGAGTTCATGAGTAGGTTGGAAGTTGGTGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAACAAGTGGCTGTTAAGGTCATACCAAAATCAAAGATGACAACAGCAATTGCTATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGACACAGCAATTTGATACAGTTCTATGATGCGTTTGAAGACCAAGATAATGTGTACATTGTAATGGAGGGAGGGAAATACTCAGAAGATGATGCAAAGGCTGTAATGGTGCAGATTCTAAATGTTGTTGCTTTTTGTCATCTTCAGGGTGTTGTGCACCGAGACCTTAAGCCAGAGCTAGGCATGGAAATGGTTAGTTGGGCATGGGTGGATTACCCATTTGTAACTGAATTTTACACCCCTTCCCCAAAGAAGCCCCTCATTCTTGTCTCACAGAACTTTTTGTACACTAAAAAGGATGAAAGTTCTGAGTTGAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGGTCTCCCTTTACAATTGTATCCTTTACATCATGAGACCTTGGGAATGATATTGTTTCTTGAATTGCGTCTTACAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATATTATGTGGCCCCTGAAGTTCTCCATAGATCTTACAGCACAGAGGCTGATGTGTGGAGTATAGGCGTGATAGCATATATTCTTTTATGTGGTAGTCGTCCATTTTGGGCTCGAACGGAGTCTGGTATTTTCAGGGCAGTCCTGAAAGCTGATCCTAGCTTTGATGAAACACCGTGGCCATCTTTATCTTCAGAAGCAAAGGATTTTGTCAAACGCTTACTGAATAAGGACCCACGGAAGCGGATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATACGAAATTACAACAATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGACATATATGAGATCATCATCCTTACGCAAGGCTGCCTTAAGGGCCTTGTCAAAGACACTGACTGCAGATGAACTCTATTATCTGAGGGAGCAATTTTCGCTGCTAGAACCAAGCAAAAATGGCAGCATATCTTTAGAGAATGTTAACAAGGCCTTGATGAAATATGCAACAGATGCCATGAAAGAGTCTCGCATCCCTGACTTTCTTTCCTCGCTGAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTCTGTGCAGCTGCGTTAAGTGTGCATCAACTTGAGGCTCTTGATCGTTGGGAACAACATGCTCGTTGTGCCTATGAGCTTTTTGATAAAGATGGAAACAGGGCTATTGTCATTGAAGAGCTTGCTTCAGAACTTGGACTTGGTCCCTCTATCCCTGTTCATGTTGTTCTTCACGATTGGATACGCCACACTGATGGAAAATTAAGCTTTCTTGGGTTTGTCAAATTATTACACGGTGTATCTAGCCGAAGCCTTGCAAAGACTCGACCATATTTGGATTTGTGTCTAGTTAGCGCTGGAACTCATTATTGTCTTGTTATCTGA 1989 0.461 MGVCTSKPQKANPYALRQAEAEADPSQIPKAPLSPAAAENHRRKDEVAAGKQSPFFPFYSPSPARFLKKSPAPSGGSRSAASTPRRFFRRPFPPPSPAKHIRAVLARRQGKKAATAAISEEGEDGGGAATDLDKRFGFSKEFMSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKSKMTTAIAIEDVRREVKILRALNGHSNLIQFYDAFEDQDNVYIVMEGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPELGMEMVSWAWVDYPFVTEFYTPSPKKPLILVSQNFLYTKKDESSELKAIDFGLSDFVRPGLPLQLYPLHHETLGMILFLELRLTDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDETPWPSLSSEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNNVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFSLLEPSKNGSISLENVNKALMKYATDAMKESRIPDFLSSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFDKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKTRPYLDLCLVSAGTHYCLVI 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01175 662 SUPERFAMILY Protein kinase-like (PK-like) 141 465 IPR011009 -
Vimu11g01175 662 Pfam Protein kinase domain 147 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01175 662 Pfam Protein kinase domain 297 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01175 662 CDD STKc_CAMK 147 451 - -
Vimu11g01175 662 Gene3D - 470 561 - -
Vimu11g01175 662 ProSiteProfiles Protein kinase domain profile. 146 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01175 662 SUPERFAMILY EF-hand 480 634 IPR011992 -
Vimu11g01175 662 FunFam CDPK-related kinase 1 488 561 - -
Vimu11g01175 662 MobiDBLite consensus disorder prediction 1 94 - -
Vimu11g01175 662 FunFam Calcium-dependent protein kinase SK5 362 457 - -
Vimu11g01175 662 ProSitePatterns Protein kinases ATP-binding region signature. 152 178 IPR017441 GO:0005524
Vimu11g01175 662 Gene3D Transferase(Phosphotransferase) domain 1 225 469 - -
Vimu11g01175 662 Gene3D Phosphorylase Kinase; domain 1 138 224 - -
Vimu11g01175 662 Gene3D - 477 631 - -
Vimu11g01175 662 FunFam CDPK-related kinase 1 139 234 - -
Vimu11g01175 662 PANTHER SERINE/THREONINE-PROTEIN KINASE 130 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01175 Vimu-Chr11 12722256 12726388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01175 1 640 EF-hand Containing Proteins AT3G50530 67.166 0.0 898
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu11g01175 Pkinase 6.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01175 K13412 - gmx:100798913 999.964