Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01172 ATGGGGAGAGGAAGGTGCTTTTTGGACATCGGCATAGGGGAAGAGCTTGAAGGAAGGATAGTGGTGGAGCTTTACGATGATGTTACTCCCAAAACTGCTGAGAACTTCAGAGCTCTCTGTACTGGTGAGAAAGGCATTGGTCCAAATACAGGGGTGCCCCTTCATTTCAAGGGATCTTGCTTTCATCGCGTTATTAAAGGCTTCATGATTCAAGGAGGTGATATATCTGCTGGAGATGGTACTGGAGGAGAATCTATATACGGAGTTAAGTTTGAAGATGAAAATTTTGAGTTAAAGCATGAAAGGAAAGGGGTGCTATCAATGGCAAACTCTGGTCCCAACACAAACGGTTCACAGTTTTTCATCACTACTACCCGAACTTCCCATCTAGACGGTAAGCATGTTGTATTTGGAAAAGTAGTTAAAGGAATGGGAGTCGTCCGATCAATCGAACATGTTGCAACCGGAGAGGATGACCGTCCAACTCTTGATGTTAAAATTGTGGATTGTGGAGAAATTCCTGAAGGTGCAGATGATGGGATATCTAACTTCTTCAAAGATGGAGACACCTATCCTGATTGGCCAGCAGACCTTGATGAGAGCCCAAATGAACTTAACTGGTGGATGAAATCTGTGGACTCAATTAAAACTTTTGGCAATGAGTATTACAGGAAACAAGACTACAAAATGGCACTAAGGAAGTACAGGAAAGCTTTACGCTACCTGGATATTTGTTGGGAAAAGGAAGGCATTGATGAGGAGATAAGTTCAGGATTGAGAAAAACGAAGTCGCAGATTTTTACAAACAGTTCTGCTTCGAAATTAAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAATTTGCAATGCGTGAGGGAGACAACAATGCTAAAGCCTTGTTTCGCCAAGGACAGGCATATATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGGCCTTGGAGCCAAATGATGCTGGAATTAAAAAGGAACTTGCTGCTGCTAGGAAGAAGATAGCTGATAGGCGTGACCTAGAGAAAAAGGCATATAGCAAGATGTTCCAATAA 1086 0.4236 MGRGRCFLDIGIGEELEGRIVVELYDDVTPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGVKFEDENFELKHERKGVLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVATGEDDRPTLDVKIVDCGEIPEGADDGISNFFKDGDTYPDWPADLDESPNELNWWMKSVDSIKTFGNEYYRKQDYKMALRKYRKALRYLDICWEKEGIDEEISSGLRKTKSQIFTNSSASKLKLGDIKGALLDTEFAMREGDNNAKALFRQGQAYMALHDIDAAVESFKKALALEPNDAGIKKELAAARKKIADRRDLEKKAYSKMFQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01172 361 Pfam Tetratricopeptide repeat 298 331 IPR001440 GO:0005515
Vimu11g01172 361 FunFam peptidyl-prolyl cis-trans isomerase D 210 361 - -
Vimu11g01172 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Vimu11g01172 361 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Vimu11g01172 361 ProSiteProfiles TPR repeat region circular profile. 298 331 - -
Vimu11g01172 361 Gene3D Tetratricopeptide repeat domain 212 361 IPR011990 GO:0005515
Vimu11g01172 361 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Vimu11g01172 361 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Vimu11g01172 361 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 10 171 IPR002130 GO:0000413|GO:0003755
Vimu11g01172 361 CDD cyclophilin_ABH_like 5 171 - -
Vimu11g01172 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Vimu11g01172 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Vimu11g01172 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Vimu11g01172 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Vimu11g01172 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Vimu11g01172 361 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Vimu11g01172 361 SUPERFAMILY TPR-like 209 358 IPR011990 GO:0005515
Vimu11g01172 361 Gene3D - 2 179 IPR029000 -
Vimu11g01172 361 SMART tpr_5 298 331 IPR019734 GO:0005515
Vimu11g01172 361 SMART tpr_5 212 245 IPR019734 GO:0005515
Vimu11g01172 361 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01172 Vimu-Chr11 12698776 12703172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01172 14 170 U-box Gene Family AT5G67530 45.570 4.36e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01172 K05864 - gmx:100804110 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01172 11 12698776 12703172 Vimu11g01172 11 12698776 12703172 ECH