Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01164 ATGGGGGATCGGGGTTCGAGCGCCGCGAAACCGATTTGGATGAAGCAAGCGGAGGAGGCGAAGCTGAAGAGCGAGGCGGAGAAGGCCGCGGCGGCGAAGGCGGCTTTCGAAGCCACGTTCAAGGGTTTGGAGAAGAATCGCGAGAAGGGTGGTGGTGTCGTTCAATCGGACAGCGAGTCGGAGGAGTACGAGGACCTGGCTCATAAGCCCATTGGGCCCGTCGATCCCTCCAAGTGCACTGCCGCGGGGACCGGGATCGCCGGTGGAACTGCGTGTGCTCCGTCATCGTTTGTGGTGGTTTCTAAGGACGCCGATGAGAGGAAGGTTTCTAATGGTGGTGCGCAAATCAAGGTGAGGGTGACGCCCGGGTTGGGTGTTGGAGGGTCTGAGCAAGAAGGGATGGTGAAGGATATGGGTGATGGAACTTACACTGTGACATATGTTGTGCCCAAGCGAGGGAATTATATGGTCAGTGTTGAGTGTAATGGGAGGCCTATCATGGGGAGTCCCTTTCCTGTGTTTTTCAGTGCAGCAGGTAATGGTAGTGGAGGGCTGCTGGGTTTAGCTCCTGCATCTACATTTCCAAACCTGGTTAATCAAACTATGCCCAACATGCCAAATTACTCTGGATCAGTTTCAGGGGCATTCCCTGGATTGTTGGGAATGATTCCAGGGGTTGTTGCTGGAGCTTCTGGGGGTGCTATTTTGCCTGGCATTGGTGCCTCACTTGGGGAAGTTTGTCGTGATTACCTCAATGGGCGTTGTGCAAAAGTAGATTGTAAGTTGAATCACCCACCTCATAATTTGCTAATGACTGCCTTAGCTGCGACAACCTCAATGGGAACACTTAGCCAAGCTCCTATGGCACCTTCTGCTGCTGCAATGGCTGCAGCTCAGGCAATAGTTGCTGCCCAAGCCCTTCAAGCGCATGCAGCTCAGGTGCAAGCTCAGTCTGCGAAAGATTCTTCTGGTTCTCCTGAAAAGTCTAGTAAAGATGATGCATTGAAGAAAACCCTTCAAGTTAGCAATCTTAGCCCTCTTCTCACTGTGGAACAGCTAAAGCAACTCTTTGCATTCTGTGGCACTGTAGTTGAATGTACGATCACTGATTCAAAGCATTTTGCTTATATAGAGTACTCAAAGCCAGAAGAGGCAACTGCTGCTCTGGCGTTAAACAACATAGATGTTGGTGGGCGCCCTTTGAATGTTGAAATGGCAAAATCACTTCCACAAAAGCCATCGGTGGCGAATTCTTCACTTGCTTCGTCATCTCTTCCTCTGATGATGCAGCAAGCTGTTGCAATGCAACAGATGCAATTCCAGCAAGCATTGTTGATGCAACAAACCATGACTGCACAGCAGGCTGCTAATCGAGCTGCAACCATGAAATCTGCCACAGAGCTAGCTGCAGCCCGAGCTGCAGAAATAAGTAAGAAATTGAATCCTGATGGACTTGAAAGTGAAGCAAAAGAGGCGAAGCAAAAATCCAGATACCCTCCTTGGACCAACAAGCTGTCCTGGATATTTGAACCAAATGAAGTTTCTTTGTTCCTTGCTGGATATGGTAGGGTTATATCACCCTCTCCCCCTCGTGGAAGATCTCAATCAAAATCAAGATCTCCCATCAATTACCGAAGAAGGAGAAGATCTCGCTCTTATTCACCTGTGCGTCATTCTAGGGATCATCGTTCTCGATCACCATTGAGGTCACATCATTACTCGAGCTATGAAAGGGAAAGGCGCTATAGAGATATTAGGGAACATGATAGGTACAGAAAACGAGATTTGGATAGGTCACTTGATTATCGTTTATCTGCTTCCAGAAGGAACAAAAGTAGGAGTGTTAGTCCTCATACACGGAAATCATCTGTTTCTCCAAAACATCATAGAGAAACTTCACCTCATAGAGGAAGGAAACAGTCACGTGCTGATTCAGGCTCTCCAAGCCGTCACAGAGGTAGGTCTTCTCCAAAGACTGATGAAAAAAAATTAAGAAACAGAAGGCGCTCAAGGTCAAGATCATCAGATGATAATAGGATTCACTATAGCAAAAATGAAGAAATCTTGCATGGAAAATCTAAACAAAAAGAGAGAATTCGTTCCAGGTCAGCATCTGTTGATGAAAAGCCTCACAGAAGGAGCCGGTCATCGCCGAGAAAAGTGGATGAAAGTAGATCCAGATACAAAAAACGCTCAAGGTCTAAATCTGTGGATGATAAGCATGATTCCCCTGAGAGATTGGATAAAAACAGATATAGAAGATTGAGGCATAATGATAAAAGGCACTCTAGGTCAAGATCTACAGAAAATAGGGATCAGTCTGATGCCAGGGTGGATGAAAGCAAAAATGAAAAGTCAAAACATCGGGATTCTAGAAGGGGCAGGTCAAAATCTGTTGAAGGGAAGCATCGCTCTAAAGATAAATCTGGTGAAAATAGAGATAAGAAATCAAAACATCGGGATAGAAGGCGTTCAAGGTCAATATCATTAGAAGGTGAGCTGGAGAAAAGAGGCACTTCACCCCATATTAATTTCGATGAGAGGAATTTTGAACTGAAACAGTCCAGTTCAAAGTTCCCTGAAGGCAAGCATCACTCCAGTGATAAATATGCAAATAGAGATGAAAAATCAGATCATCAAAAGAAAACCCCACCTAAATCAAAATCAAAACAATTTGATGGGAGTGGGTCCTTCCAAGGAAATTTCGAGGATTATGATTCAAAGGGGAAATCAGAATCTGATTCTGGATCTGCAGAAGTTAAGCATAATTTGAATGATGGAGAAGATACTGCCTGTGAAGAAAACTCAAAACTTTCTGGAGATGTCAAGGACTCAATTACCCTTAACGATACTGGGATGCTGACCTCAGTGAATGGTAACTACAAGTTAGAAGGATCAAATGAAGCTGATGATAACCCAGGATGGATATGCGTGGAAGAAGTGGGAAATGTAAAATATTAA 2961 0.4529 MGDRGSSAAKPIWMKQAEEAKLKSEAEKAAAAKAAFEATFKGLEKNREKGGGVVQSDSESEEYEDLAHKPIGPVDPSKCTAAGTGIAGGTACAPSSFVVVSKDADERKVSNGGAQIKVRVTPGLGVGGSEQEGMVKDMGDGTYTVTYVVPKRGNYMVSVECNGRPIMGSPFPVFFSAAGNGSGGLLGLAPASTFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGVVAGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSSGSPEKSSKDDALKKTLQVSNLSPLLTVEQLKQLFAFCGTVVECTITDSKHFAYIEYSKPEEATAALALNNIDVGGRPLNVEMAKSLPQKPSVANSSLASSSLPLMMQQAVAMQQMQFQQALLMQQTMTAQQAANRAATMKSATELAAARAAEISKKLNPDGLESEAKEAKQKSRYPPWTNKLSWIFEPNEVSLFLAGYGRVISPSPPRGRSQSKSRSPINYRRRRRSRSYSPVRHSRDHRSRSPLRSHHYSSYERERRYRDIREHDRYRKRDLDRSLDYRLSASRRNKSRSVSPHTRKSSVSPKHHRETSPHRGRKQSRADSGSPSRHRGRSSPKTDEKKLRNRRRSRSRSSDDNRIHYSKNEEILHGKSKQKERIRSRSASVDEKPHRRSRSSPRKVDESRSRYKKRSRSKSVDDKHDSPERLDKNRYRRLRHNDKRHSRSRSTENRDQSDARVDESKNEKSKHRDSRRGRSKSVEGKHRSKDKSGENRDKKSKHRDRRRSRSISLEGELEKRGTSPHINFDERNFELKQSSSKFPEGKHHSSDKYANRDEKSDHQKKTPPKSKSKQFDGSGSFQGNFEDYDSKGKSESDSGSAEVKHNLNDGEDTACEENSKLSGDVKDSITLNDTGMLTSVNGNYKLEGSNEADDNPGWICVEEVGNVKY 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01164 986 Gene3D - 297 419 IPR012677 -
Vimu11g01164 986 MobiDBLite consensus disorder prediction 525 579 - -
Vimu11g01164 986 MobiDBLite consensus disorder prediction 762 816 - -
Vimu11g01164 986 SMART flmn_3 75 178 IPR001298 GO:0005515
Vimu11g01164 986 MobiDBLite consensus disorder prediction 824 888 - -
Vimu11g01164 986 MobiDBLite consensus disorder prediction 540 567 - -
Vimu11g01164 986 ProSiteProfiles Filamin/ABP280 repeat profile. 71 175 IPR017868 -
Vimu11g01164 986 Coils Coil 14 35 - -
Vimu11g01164 986 Gene3D Immunoglobulins 73 180 IPR013783 -
Vimu11g01164 986 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 280 673 - -
Vimu11g01164 986 CDD RRM_SF 339 404 - -
Vimu11g01164 986 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 408 IPR000504 GO:0003723
Vimu11g01164 986 MobiDBLite consensus disorder prediction 670 752 - -
Vimu11g01164 986 SUPERFAMILY RNA-binding domain, RBD 321 414 IPR035979 GO:0003676
Vimu11g01164 986 Pfam Filamin/ABP280 repeat 73 171 IPR017868 -
Vimu11g01164 986 MobiDBLite consensus disorder prediction 602 946 - -
Vimu11g01164 986 MobiDBLite consensus disorder prediction 905 940 - -
Vimu11g01164 986 ProSiteProfiles Zinc finger C3H1-type profile. 246 267 IPR000571 GO:0046872
Vimu11g01164 986 MobiDBLite consensus disorder prediction 637 663 - -
Vimu11g01164 986 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 401 IPR000504 GO:0003723
Vimu11g01164 986 SMART rrm1_1 338 404 IPR000504 GO:0003723
Vimu11g01164 986 SUPERFAMILY E set domains 73 173 IPR014756 -
Vimu11g01164 986 MobiDBLite consensus disorder prediction 889 904 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01164 324 407 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 8.82e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01164 - - gmx:100790138 1334.32