Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01162 ATGCGGTGTCATGGCTTAACCGTACACGGAAGCAACCACCGTGGCTTCTGCGTCCCCACCGTGTCTCCGGTGTTCTTGAGACCCACCCGACCCGTCACCCGTATATCGTTTCCCAAGGCTACCCTCAAGAACGAGGGACTAGTGATGGAGTTGAGCTTCTACGAGCTTCTGGGTATACCCGAATCCGGTTCCTTGATGGAGATCAAGAACGCGTACAAGCAACTCGCCCGAAAGTACCACCCGGATGTGTCTCCTCCGGGTCGGGTGGAGGAGTACACCAAACGGTTTATTCAGGTGCAGGAAGCCTACGAAACTCTCTCCGATCCTTCCCGAAGAGCCATGTACGATCACGACATGGCTAAAGGTATCAACTTCGCTTTCAACGCCCGCAGACGCCGCAATTACCACGATCAGCACATGAAATCTGCACTTGTTTTGTCCTTGCTGCGAGCTGGTATTATTAACACTAATTTGATTTACTCAGTGATTAAAGCTGTTGGTTTTGAAAAGGTGGTGGAACAAAAAAGTGAATGGAAATCTCGGTGGCAATCTCAACTGTCGGAGCTGAAGAGAAGAAGTAGCAGCAAGGAGGGTGGAGGGAATATGTCATGGGCAGCGAGAATGCGCCAGCAGAGGGATGAATTGGCTAATGAATCATGA 660 0.5076 MRCHGLTVHGSNHRGFCVPTVSPVFLRPTRPVTRISFPKATLKNEGLVMELSFYELLGIPESGSLMEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRAMYDHDMAKGINFAFNARRRRNYHDQHMKSALVLSLLRAGIINTNLIYSVIKAVGFEKVVEQKSEWKSRWQSQLSELKRRSSSKEGGGNMSWAARMRQQRDELANES 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01162 219 PRINTS DnaJ domain signature 72 87 IPR001623 -
Vimu11g01162 219 PRINTS DnaJ domain signature 91 111 IPR001623 -
Vimu11g01162 219 PRINTS DnaJ domain signature 54 72 IPR001623 -
Vimu11g01162 219 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Vimu11g01162 219 Gene3D DnaJ domain 40 143 IPR036869 -
Vimu11g01162 219 MobiDBLite consensus disorder prediction 184 219 - -
Vimu11g01162 219 ProSiteProfiles dnaJ domain profile. 52 119 IPR001623 -
Vimu11g01162 219 CDD DnaJ 53 108 IPR001623 -
Vimu11g01162 219 Pfam DnaJ domain 53 116 IPR001623 -
Vimu11g01162 219 FunFam Chaperone protein dnaJ 20, chloroplastic 40 144 - -
Vimu11g01162 219 SUPERFAMILY Chaperone J-domain 51 125 IPR036869 -
Vimu11g01162 219 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 49 214 - -
Vimu11g01162 219 SMART dnaj_3 51 111 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01162 Vimu-Chr11 12482891 12485175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01162 54 116 C2H2 Transcription Factor Family AT1G74250 45.455 1.80e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01162 - - gmx:100101903 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01162 11 12482891 12485175 Vimu11g01162 11 12482891 12485175 ECH