Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01147 ATGGACTTCTCGAAGAAGCGCAAGACCGAAGAGAACGGCGATGCTGATTCTCTGTCGTCACCCCCCACCCAAGCATTCCCCACCGCCACCGTCCCCACAACCGCCCCCCTGGCAGCGGAAGACATCCGCAAGATCTTGCGTCCGTTTTCCCAGGAACAGCTCCTCGACCTCCTCCAATCAGCGTCGCTACGCCACTCCGATGTCCTCGACGCCGTGCGCGCCGTCGCGGACCGCGACTCTACTCTCCGTAAGCTTTTCGTTCGCGGACTTGCCGGCGAAACCACCAGCGAGACCCTGCGCAGCGTGTTCTCCACTTTCGGCGAACTCGACGAGGCCATCGTGATCTTCGACAAGGCCACGGGGCGCTCCAAGGGCTATGGCTTCGTGGTCTTTCGCCACGTGGATGGCGCTATCCTCGCGCTGAAGGACCCCAGCAAGAAGATCGATGGCCGCATGACGGTAACGCAACTCGCCGCAGCTGGTGGACCTGGGGGCTCCGGCGACGTGTCAGCCAGGAAGGTTTTCGTCGGGAACGTGCCGTTCGAGATTTCCTCGGATAAACTACTGAGCGAATTCCTCAAGTTCGGAGAGGTCGAGGAAGGGCCTCTAGGGTTTGACAAATCGAGCGGCAAATCGAGGGGTTTCGCATTTTTCGTTTATAAGACGGAGGAAGGTGCGAGGGCTTCGTTGGTGGAACCTGTTAAGACCATTGATGGGCACCAAGTGATTTGCAAATTGGCTGTGGATAGCAAAAAGACGAAACCCTTTGGAGGGGATCAACATCAACATCAACACACGCAGCATCAGCAGCAACAACAGCAACATCCGCAGCAACAGATGCAACAACAAGGTCCTATGATGATACCTCAGTATGGTGGATATGGTGGGAATGGCTACGGAATACAGCACTCGGTGCCACCGTATAACAATCCGGTTCAGGTTTCTGGTGGTGGTGGGTATGGCCATGGAATTGGTGGTGGATATGGTAATTCGCAGATGGGTGGACCGGTTTCCGGTGACTACGGAACTAGACTGCCTCCCAATTCTGGTGGGGGGTTCCCTGAAGGCTCCCAGTATGGCTACCCTGCTTCTTCCACGCTTCCACCACAGCAGCAAGTGCCTATGCCGAGACCTCCTCCCGGAGGAATGTACCAAGGCGTGCCACCCTATTATTGA 1176 0.5672 MDFSKKRKTEENGDADSLSSPPTQAFPTATVPTTAPLAAEDIRKILRPFSQEQLLDLLQSASLRHSDVLDAVRAVADRDSTLRKLFVRGLAGETTSETLRSVFSTFGELDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGSGDVSARKVFVGNVPFEISSDKLLSEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPVKTIDGHQVICKLAVDSKKTKPFGGDQHQHQHTQHQQQQQQHPQQQMQQQGPMMIPQYGGYGGNGYGIQHSVPPYNNPVQVSGGGGYGHGIGGGYGNSQMGGPVSGDYGTRLPPNSGGGFPEGSQYGYPASSTLPPQQQVPMPRPPPGGMYQGVPPYY 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01147 391 MobiDBLite consensus disorder prediction 346 391 - -
Vimu11g01147 391 SUPERFAMILY RNA-binding domain, RBD 77 162 IPR035979 GO:0003676
Vimu11g01147 391 MobiDBLite consensus disorder prediction 1 29 - -
Vimu11g01147 391 MobiDBLite consensus disorder prediction 262 286 - -
Vimu11g01147 391 MobiDBLite consensus disorder prediction 369 391 - -
Vimu11g01147 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 240 IPR000504 GO:0003723
Vimu11g01147 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Vimu11g01147 391 SUPERFAMILY RNA-binding domain, RBD 169 263 IPR035979 GO:0003676
Vimu11g01147 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Vimu11g01147 391 SMART rrm1_1 84 156 IPR000504 GO:0003723
Vimu11g01147 391 SMART rrm1_1 173 245 IPR000504 GO:0003723
Vimu11g01147 391 PANTHER GEO13361P1-RELATED 170 376 - -
Vimu11g01147 391 MobiDBLite consensus disorder prediction 15 29 - -
Vimu11g01147 391 FunFam UBP1-associated protein 2C isoform A 66 168 - -
Vimu11g01147 391 Gene3D - 166 284 IPR012677 -
Vimu11g01147 391 MobiDBLite consensus disorder prediction 253 295 - -
Vimu11g01147 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 253 IPR000504 GO:0003723
Vimu11g01147 391 Gene3D - 74 161 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01147 Vimu-Chr11 12266989 12268164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01147 155 247 C2H2 Transcription Factor Family AT2G19380 31.183 4.06e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01147 K12741 - gmx:100804230 545.814