Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01146 ATGGAGAAGCAGAAAAGTGAGAAGGAAGGGTGTGAGAATGTGATGCTGTTACAAAAAAGTGTGAAGAAGCTTCACTTTGGAAGCTGGGAAGAGAAAGAATTGGCAGCAAAAGAGATAGAAAGGTTGGCTAAAGAATATGAGAAGGTGAGGGAATTGGCGACGGAGCTTGGGGTGGTCAGAGTGTTGGTTTCCATGGCGCTTTCCGACGTCGCTAGCCGCCGCCGAGTGGCACTCAAGGCATTGATCCACCTATCCAATGGAAATCACAAGAACAAGGCTTTGATAGTGGAGGAAGGACTGTTGTGCAAACTGCCTAAGAAAATTGACCTTGAAGATGAATCAATAAGAGAGTTTGCAGATTTGCTCTCTTCGTTATCATCTCTTGGAAATATCCAATTTCCTCATTCTTCATTAGACTTTCTCCAATTTCTCATAGACATCCTAAAGTCATGCCGAAGCTTTGATACAAAAGAGTCGTGTTTGGTAGCAATGTGCAACATCTCAACTGTGCTAGAGAATGCAGGGCCTTTGATTTCTAAAGGGGTTGTACCTATTCTCTTGGAACTGTGCTCAGAGAAAGGAACATCAGAGAAAGCACTTACCATCCTTGGGAACTTGGGGGTGACTTTAATGGGAAAGAAAGCATTGGAGAACAGCTCAATGGTGCCAAAATGCTTGATTGAGATCTTATCGTGGGAAGATGAACCCAAATGCCAAGCGTTGTCAGCTAATATTCTGATTATTCTGGCTCATAAAAATTCAACACAGAGAAGTAAAATGGTACAGTCAGGGATTATTCCTGTACTTCTTCAATTAGCTTTATTAGGAAGTTTTTCGGTTCAGAAAAGAGCACGGAAATTATTGCGATGGTTCAGGGATGAACGGCAAATAGAAATGGGGCCACATTTAGGCCCACAGTCTGTAACACTTAAAAATCTAAGAGACACAGAAGAAGAAGAAGGGAGGAGAACGATGAAGAGTTTAGTGAGAGAAAGTCTGCATAGGAATATGGAAATAATAACTAAAAGAGTTAATGCAGGTGAGGATTCTTCTAATGGGCTTAAGTCCATGGTTACCAGCACAAGCTCCAAAAGTTTGCCAAACTGA 1107 0.4192 MEKQKSEKEGCENVMLLQKSVKKLHFGSWEEKELAAKEIERLAKEYEKVRELATELGVVRVLVSMALSDVASRRRVALKALIHLSNGNHKNKALIVEEGLLCKLPKKIDLEDESIREFADLLSSLSSLGNIQFPHSSLDFLQFLIDILKSCRSFDTKESCLVAMCNISTVLENAGPLISKGVVPILLELCSEKGTSEKALTILGNLGVTLMGKKALENSSMVPKCLIEILSWEDEPKCQALSANILIILAHKNSTQRSKMVQSGIIPVLLQLALLGSFSVQKRARKLLRWFRDERQIEMGPHLGPQSVTLKNLRDTEEEEGRRTMKSLVRESLHRNMEIITKRVNAGEDSSNGLKSMVTSTSSKSLPN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01146 368 SUPERFAMILY ARM repeat 21 288 IPR016024 -
Vimu11g01146 368 MobiDBLite consensus disorder prediction 344 368 - -
Vimu11g01146 368 Gene3D - 218 290 IPR011989 -
Vimu11g01146 368 Coils Coil 32 56 - -
Vimu11g01146 368 Gene3D - 15 217 IPR011989 -
Vimu11g01146 368 MobiDBLite consensus disorder prediction 345 368 - -
Vimu11g01146 368 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 3 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01146 Vimu-Chr11 12260805 12262459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01146 30 296 U-box Gene Family AT1G67530 27.372 1.19e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01146 - - var:108327871 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01146 11 12260805 12262459 Vimu11g01146 11 12260805 12262459 ECH