Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01145 ATGGTTCACTCCTTCTATGAGAAAAGCTCTTCTTCTGGCTCTGATATTTCGGGGTTGTTCAATCCCACTTTTCAAAGTGTTGGAGCTTCCAATGGTGAATTTGCGAAGGATGGCTTGTCATCGGCACATTCTTTGGTTTATGAGAGTGAGAAGGGAGAGCTGGTGAAGTGCTCTTCATCAGCTGCAAGGGTAGGGAAGAATGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAATCATAGTGAAGCAGAGAGAAGAAGGAGGGAGCGAATAAACGGTCATCTTGCAACACTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTGATAAAGCAAGTGAAGGAATTGAAGAAAACTGCAGTAGAAGCAAGCAAGGGTTTTCCTATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATGTGATGGATCCATGTCTTACAGTGCAACTATTTGCTGTGATTTTCGACCTGAAATAATATCTGACCTTAGACAAACCCTTGATTCTCTTCCACTGCTTCTACAGAAGGCAGAAATTTCAACTTTGGGAGGAAGAATGAAGAATGTATTCGTCTTCACATGTTGCAAAGAGAACATTAATATTGATACTGAAGCATGCCAAGGTCTTGCAAGAACTGTTCATCAGGCACTGTGTTCTGTACTGGAAAAGGCTTCTGCCTCACTTGAGTTCTCACCCAGAACATCACATGCTAACAAGAGGAGAAGACTATGCTTTATTGAAACATCCACTTCCTCATGCAACCATGGATCTTGTTCCTGTTGA 810 0.4272 MVHSFYEKSSSSGSDISGLFNPTFQSVGASNGEFAKDGLSSAHSLVYESEKGELVKCSSSAARVGKNEICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVIKQVKELKKTAVEASKGFPIPMDADEVKVEPCDGSMSYSATICCDFRPEIISDLRQTLDSLPLLLQKAEISTLGGRMKNVFVFTCCKENINIDTEACQGLARTVHQALCSVLEKASASLEFSPRTSHANKRRRLCFIETSTSSCNHGSCSC 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01145 269 SMART finulus 82 131 IPR011598 GO:0046983
Vimu11g01145 269 Pfam Helix-loop-helix DNA-binding domain 80 125 IPR011598 GO:0046983
Vimu11g01145 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 129 IPR036638 GO:0046983
Vimu11g01145 269 PANTHER TRANSCRIPTION FACTOR BHLH30 39 256 IPR045847 GO:0003700|GO:0006355
Vimu11g01145 269 Gene3D - 73 134 IPR036638 GO:0046983
Vimu11g01145 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01145 Vimu-Chr11 12252423 12255192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01145 73 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.176 3.27e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g01145 HLH 4.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01145 - - gmx:100804756 427.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01145 11 12252423 12255192 Vimu11g01145 11 12252423 12255192 ECH