Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01142 ATGTATACACTCTTCAACATTCTTCTTTTCTTTCTCACACTTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCACACCCTCGCCGTGTTCTTCACCAACCCCTCTTCCCCAGAATCTCTATCCCTCCAACACATCCTCCAGCTTTATCCCCTCAACCCCAAAAGCAACACCATTTACCCAAGTTTCCATTTTCATCTTCTTCATCCTTCTCGCCTCCACCGCCGCAAAAACCTTTCTTTCCTTCTTACCATTCCCCTCCACTCCCTCCTTCCCCCACCGTCGTTGCTACTTTCCCCGCTAACATCTCCTCCCTCCTCCTCCCCCACCCCTACTCCCACCACCACCGCTCCGCCGCCGCCCTCGCCGTCTCCCTCTCCCTCTTCTCCCTCGCCCTCCTCGCCGCCGTCGCGTTCTTTCTCCTCCACCGCCGCCGCGCTAACAGGACTTCCTCCTCCGACGCCACCCATGACGACGACGATGAGAAAGCCTCGAGATCCGACAGCCTCCGCCTGTTCTCGCCGAACGCCGCCGCCTCCGACGGCGTCGATAGAAAACCCCGCGGAAAGTCCTCCCCGACGTCGGAGCTACTCTACCTCGGCACGGTAGCGAACTCGGTGAACTCAACGCTAGACACAAGCTCCAGTCACCACGACGACGGTTTCCGGCCACCGTATCAAAAACTCGGCGACTCGCCGGAACTGAACCCACTCCCACCTTTGCCACGTCACAAATTCAAACCATGGATGAATGAAGATGACGGTGATAAAAATGTGAAAGAGAAAGTGGAACAACAACAAGAGGCAGAAGAAGAAGAAGAGGATGAACAGTTTTTTTCTCCAAGAAGTTCTTCTGGTGGGAACAATCAACATAGTCCTCCTTCTCCTTCGGCCGTTGCTGCTTCAAGTTCGCGCGTGAATAATAAAATCGGTTCTACAAGCTTCACTTCTCGAACTCCTTCGTACCCTCGTTCCAATTCCCTCTCTTTCTCTCGTTCCCCGTCTCTTAATTTCAGCCCCGCAAGTGTTAAATCACTCCCTCCACACAACCCTGCTTCTCCTTCTTTCTCTTCATCATCTTCTTCTCCCAGGGAAGAATGGCATGTACCTTCAAGGGACCAAAATTCTCCCGCGAGAAATTTAACTCCTCCACCGCCGCCGCCACCTCCGCCGCCTGGGATTTCGGAAGCTCCAGTTTCTGTTAGGAAAGTGAGTGAGGAGACACCGAAGCCAAAGTTGAAAGCTTTACATTGGGATAAAGTTAAGGCCAGCTCGGACAGGGTCATGGTTTGGGACCAGTTGAGACCCAGTTCTTTTCAGTTGAACGAGGATATGATTGAAACGCTTTTTATGGTAAATAATTCCAAGGAGGGTGTCGGGGTTGCGATTAGAGATAATGCTCGGCGCCACATAGTTCATTCTGCTTCTCCCATGCCCATGGAGAATAGGGTCCTTGACCCTAAGAAGTCTCAGAACATTGCCATTTTGCTTAGGGCTCTCAATGTTACCATTGATGAAGTTTGTGATGCCCTCAGAGAAGGCAATTGTGATACGTTGGGAACAGAACTTCTTGAAAGCTTGTTAAAGATGGCTCCAACTAAAGATGAAGAATCTAAGCTGAAGGAATTTCAAGATGAATCGCCCTTCAAGCTTGGCCCAGCTGAGAAATTTCTCAAAGTTGTTCTTGATATACCTTTCGCTTTTAAGAGAGTGGATGCTATGCTCTACATTGCTAATTTTGATTCAGAATTAGAATACCTTAGAAAGTCCTTTGAAACTCTGGAGCATGACTTCCTTGGAATGACATTTGGTGTCGATACTGGTTCTGTGATGGGGAATCATGTGGCCTGTGAGGAATTAAAGAATAGTCGAATGTTTTTGAAGATACTTGAAGCAGTGTTAAGAACTGGAAATAGAATGAATGTTGGCACCAATCGTGGTGATGCTCATGCGTTCAAACTGGACACACTTTTGAAGTTAGCTGATATTAAAGGAACTGATGGAAAGACTTCTTTGTTGCATTTTGTTGTACAGGAAATTGTCAGAACCGAGGGTTCTCATGTTTCTGGTTCTAACCAACAGCATGCCTCTGACAATGTCCAACAATACAGTCTTCAAGATGAGGTTGACTTTAAAAAGCTTGGCCTGCAAATTGTTTCAGGACTGAGCGGGGAGCTCACCAATGTTAAAAAAGCAGCTGCTATGGATTCAGACATGCTCAGTAGTGATGTTGCCAAACTTGCCAGAGGAATTGACAAAGTTGTGCAAGTAGTGAAATTGAATGAGGAGTCACCTTTGAAAGAAACTAACCAAAAGTTTTCGGAGGCCATGAAAGGTTTCTTGGAAAGGGGAGAGCAAGAGATTTCAACAATCCAGGCCCAAGAGAAAAATTGTTTCTCTTCGGTGAAGGAGATAACTGAGTATTTCCATGGAAATTCGGCAAAGGAAGAAGCTCATCCATTTAGAATTTTTATGGTTGTGAGGGATTTCCTTTCTATTCTAGATGGTGTTTGCAAGGAAGTTGGTAAAGTGAATGAGAGAACTTTGGTTGGTTCCCGTCATTCTGTAATGCCTGCAAATCCTATAATGCAATCCTTTTTTCCTGAGATTATTGGTAAGCAACCATCTGATTCCTCCGAATCTGACTAA 2643 0.4673 MYTLFNILLFFLTLFSSSSSSSSSHPRRVLHQPLFPRISIPPTHPPALSPQPQKQHHLPKFPFSSSSSFSPPPPQKPFFPSYHSPPLPPSPTVVATFPANISSLLLPHPYSHHHRSAAALAVSLSLFSLALLAAVAFFLLHRRRANRTSSSDATHDDDDEKASRSDSLRLFSPNAAASDGVDRKPRGKSSPTSELLYLGTVANSVNSTLDTSSSHHDDGFRPPYQKLGDSPELNPLPPLPRHKFKPWMNEDDGDKNVKEKVEQQQEAEEEEEDEQFFSPRSSSGGNNQHSPPSPSAVAASSSRVNNKIGSTSFTSRTPSYPRSNSLSFSRSPSLNFSPASVKSLPPHNPASPSFSSSSSSPREEWHVPSRDQNSPARNLTPPPPPPPPPPGISEAPVSVRKVSEETPKPKLKALHWDKVKASSDRVMVWDQLRPSSFQLNEDMIETLFMVNNSKEGVGVAIRDNARRHIVHSASPMPMENRVLDPKKSQNIAILLRALNVTIDEVCDALREGNCDTLGTELLESLLKMAPTKDEESKLKEFQDESPFKLGPAEKFLKVVLDIPFAFKRVDAMLYIANFDSELEYLRKSFETLEHDFLGMTFGVDTGSVMGNHVACEELKNSRMFLKILEAVLRTGNRMNVGTNRGDAHAFKLDTLLKLADIKGTDGKTSLLHFVVQEIVRTEGSHVSGSNQQHASDNVQQYSLQDEVDFKKLGLQIVSGLSGELTNVKKAAAMDSDMLSSDVAKLARGIDKVVQVVKLNEESPLKETNQKFSEAMKGFLERGEQEISTIQAQEKNCFSSVKEITEYFHGNSAKEEAHPFRIFMVVRDFLSILDGVCKEVGKVNERTLVGSRHSVMPANPIMQSFFPEIIGKQPSDSSESD 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01142 880 Coils Coil 254 274 - -
Vimu11g01142 880 SUPERFAMILY Formin homology 2 domain (FH2 domain) 381 845 - -
Vimu11g01142 880 MobiDBLite consensus disorder prediction 278 363 - -
Vimu11g01142 880 ProSiteProfiles Formin homology-2 (FH2) domain profile. 401 858 IPR015425 -
Vimu11g01142 880 MobiDBLite consensus disorder prediction 146 194 - -
Vimu11g01142 880 MobiDBLite consensus disorder prediction 244 264 - -
Vimu11g01142 880 PANTHER FORMIN-RELATED 10 871 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vimu11g01142 880 MobiDBLite consensus disorder prediction 66 83 - -
Vimu11g01142 880 MobiDBLite consensus disorder prediction 377 394 - -
Vimu11g01142 880 MobiDBLite consensus disorder prediction 208 406 - -
Vimu11g01142 880 MobiDBLite consensus disorder prediction 42 83 - -
Vimu11g01142 880 MobiDBLite consensus disorder prediction 146 166 - -
Vimu11g01142 880 Pfam Formin Homology 2 Domain 404 593 IPR015425 -
Vimu11g01142 880 Pfam Formin Homology 2 Domain 613 832 IPR015425 -
Vimu11g01142 880 Gene3D Formin, FH2 domain 397 843 IPR042201 -
Vimu11g01142 880 SMART it6_source 401 847 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01142 Vimu-Chr11 12222830 12227158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01142 16 869 FH2 protein (formin) Gene Family AT2G43800 45.299 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01142 - - vun:114175163 1409.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01142 11 12222830 12227158 Vimu11g01142 11 12222830 12227158 ECH