Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01125 ATGGAAGGAGGAGGAGGAGCTGCTCCGCCTGCTGACACCGTTATGTCGGATGCCGCACCACATCCAGAACCCCATCAGCCCCCGGCAGCAGCCATGGGGATCGACAATATTCCGGCCACGCTCAGTCACGGTGGCAGGTTCATCCAATACAACATCTTTGGGAACATATTCGAAGTCACCGCCAAATACAAGCCACCCATCATGCCCATCGGGAAAGGCGCTTACGGCATCGTTTGCTCGGCTTTGAACTCGGAGACGAATGAGCATGTTGCCATCAAGAAGATTGCGAATGCGTTTGACAACAAGATTGACGCCAAGAGGACCCTCCGAGAAATCAAGCTGCTTCGTCACATGGATCATGAAAACGTGGTTGCAATCAGGGATATAGTGCCACCACCTCAAAGGGAGATCTTCAATGATGTTTACATTGCTTATGAATTGATGGACACTGACCTGCACCAAATCATTCGTTCAAATCAAGCGTTATCAGAGGAGCATTGTCAGTATTTTCTGTATCAAATTCTCCGTGGGTTGAAGTATATACATTCTGCAAATGTTCTGCACAGGGACTTAAAGCCTAGCAACCTTCTCCTGAATGCAAACTGCGACTTAAAAATTTGTGATTTTGGACTGGCTCGAGTTACCTCTGAAACTGATTTTATGACTGAATATGTTGTTACAAGATGGTACCGTGCACCAGAGCTTCTGTTGAACTCTTCTGATTACACAGCAGCAATTGATGTATGGTCTGTTGGTTGTATTTTCATGGAACTGATGGATCGAAAACCTTTGTTTCCTGGCAGAGATCACGTGCATCAGTTGCGTCTACTTATGGAGGTAACTTATTCAATAGTCTTTATTATGAGAAGAACATCCTCTGCATCGAAATCAGTGTATAACAGGCATGCTCTTACTTTGCAGTTGATTGGCACCCCTTCAGAAGATGATTTGGGGTTTCTGAATGAAAATGCTAAGAGATACATTAGGCAATTGCCTCCTTACCTCCGTCAATCTTTCCAAGAAAAGTTTCCACATGTCCACCCTGAAGCTATAGATCTTGTTGAGAAAATGTTAACTTTTGACCCTAGAAAAAGGATTACTGTTGAAGATGCACTGGCACACCCGTACTTAACGTCTCTGCATGACATCAGTGATGAACCTGTGTGCATGACTCCCTTTAGCTTTGACTTTGAGCAACATGCTTTGACTGAAGAACAGATGAAAGAACTGATATACCGAGAGGCTTTAGCATTTAATCCTGAGTATCAGCAGTAG 1275 0.4439 MEGGGGAAPPADTVMSDAAPHPEPHQPPAAAMGIDNIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREIFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMEVTYSIVFIMRRTSSASKSVYNRHALTLQLIGTPSEDDLGFLNENAKRYIRQLPPYLRQSFQEKFPHVHPEAIDLVEKMLTFDPRKRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQ 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01125 424 ProSitePatterns MAP kinase signature. 99 202 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu11g01125 424 CDD STKc_TEY_MAPK 57 420 - -
Vimu11g01125 424 Gene3D Transferase(Phosphotransferase) domain 1 149 404 - -
Vimu11g01125 424 Gene3D Phosphorylase Kinase; domain 1 40 148 - -
Vimu11g01125 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vimu11g01125 424 ProSiteProfiles Protein kinase domain profile. 64 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01125 424 FunFam Mitogen-activated protein kinase 49 158 - -
Vimu11g01125 424 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 62 378 - -
Vimu11g01125 424 ProSitePatterns Protein kinases ATP-binding region signature. 70 94 IPR017441 GO:0005524
Vimu11g01125 424 SUPERFAMILY Protein kinase-like (PK-like) 69 385 IPR011009 -
Vimu11g01125 424 FunFam Mitogen-activated protein kinase 148 403 - -
Vimu11g01125 424 SMART serkin_6 64 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01125 424 Pfam Protein kinase domain 69 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01125 424 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01125 Vimu-Chr11 11966360 11970217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01125 1 424 MAP Kinase Gene Family AT2G43790 82.353 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu11g01125 Pkinase 6.7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01125 K14512 - gmx:100805830 747.273