Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01115 ATGAACTGGACCGTTGATCCCGCGCTCTTCGCTGTTCTCTTTCCCTCTCTATGGGAGATCAAAGTCGCCGTGGCCGCCTCCGTCTTCGTCATAATCGCCTATCGCTTCTTCGCCGCCCCAACCGGACACTTCCACGCCGATCCGTCGCTTCCCGACAATTCCGCCACAGTCGATGTCGCGGACGATAAGGACAAGATGGAGCAGCCTAAAGTGGATTCTCAAGCCAGTTCAGCGTACTTGATAAAGTTAGAACTATTGGCTGCTAAGAACCTTGTTGGTGCAAATTTAAATGGCACATCGGATCCTTATGCTATCATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCAAGAAATCCAATGTGGGGCGAGGAGTTCAATTTTTCTGTTGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTATTCCGGTTGAAAGTGAAGGTCAGACTGGTGCAGTGTGGCATACTTTGGATAGTCCATCAGGGCAGGTTTGTCTTCATATAAAAACAATAAAACTATCTGGAAATTCTTCCAGGATAAATGGATATGGAGGAGCCAACCCCCGAAGAAGGATCCCACCCTTGGAAAGACAGGGGCCCACTGTAGTCCACCAAAAGCCAGGGCCTCTTCAGACAATATTTTCTCTTCATCCAGACGAGGTTGTTGATCATAGTTATTCTTGTGCACTTGAGAGGTCATTCTTGTACCATGGTCGTATGTATGTCTCAGCATGGCACATTTGTTTTCACTCCAATGTGTTCTCAAAGCAAATGAAGGTGCGTATTCCATTTGAAGATATAGATGAGATTCGACGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATACTTCGCATGGGTGCTGGTGGACATGGTGTCCCTCCTTTGGGAAGCCCTGATGGTAGGGTCAGATATATGTTCGCATCCTTTTGGAACAGGAATCATGCATTCAGAAATCTCCAGCGTGCTGCAAAGAATTTCCATGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAGCAGCGTGCACATAGCAGTTCTGTAAGAGGCAATAAACTGCTGGATAAGGCTCCTGTAGAAAGCATATTAAAAATTGGAAAACTTCCACATTTTATCAAAGAAGAGGCGTTAGTTGGTATATACAATGATGTTTTTCCCTGCACAGCGGAGCAGTTTTTTAACTTATTGTTGAATGACGGTTCAAATTTTACTAGCAAATATCGTTCAGTACGAAAGGACACTAATCTTGTGATGGGCCAGTGGCATACAGCAGACGAATATGATGGTCAAGTCCGAGAGATAACCTTCAGATCACTTTGTAACAGCCCTATGTGCCCTCCAGATACAGCCATGACAGAGTGGCAACATCATGTTTTAACACCAGACAAGAAAAACCTGGTGTTTGAGACTGTGCAGCAGGCACATGATGTTCCATTTGGATCCTATTTTGAGGTTGGGAATACTTTGAATATCTCATTTGGATACTTGTACACTGTAAATGGAGCTTGGCTACAATTAACGAAAGCTCGTGTAATCTGGACATTAAAGTGGGCGCAAGCTAAAATTCCATTCCAGGACATCAAGAAGGGAAGCCAATACGAAAATGATTTGGGAAATATTAAAGTAAAAAATAAAACCCGAGTAATTTCCTTCTCTCTTACAGGTGCACATTTCAAGAAATGGTGTGTTATGCAATCCAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGAGGTCATGTTAGATGTTGCTCGATCGTATATAAAATCAAATACTTCTAATGACGAGAACGATGAGGTCTCTTCACCCCTTGCACTGCCCCCGGAAAGCTGA 1914 0.4326 MNWTVDPALFAVLFPSLWEIKVAVAASVFVIIAYRFFAAPTGHFHADPSLPDNSATVDVADDKDKMEQPKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTIPVESEGQTGAVWHTLDSPSGQVCLHIKTIKLSGNSSRINGYGGANPRRRIPPLERQGPTVVHQKPGPLQTIFSLHPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVRIPFEDIDEIRRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKKENAESEQRAHSSSVRGNKLLDKAPVESILKIGKLPHFIKEEALVGIYNDVFPCTAEQFFNLLLNDGSNFTSKYRSVRKDTNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHHVLTPDKKNLVFETVQQAHDVPFGSYFEVGNTLNISFGYLYTVNGAWLQLTKARVIWTLKWAQAKIPFQDIKKGSQYENDLGNIKVKNKTRVISFSLTGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLDVARSYIKSNTSNDENDEVSSPLALPPES 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01115 637 Gene3D C2 domain 57 194 IPR035892 -
Vimu11g01115 637 Pfam GRAM domain 231 299 IPR004182 -
Vimu11g01115 637 CDD C2 81 177 - -
Vimu11g01115 637 SMART C2_3c 80 176 IPR000008 -
Vimu11g01115 637 FunFam BAG-associated GRAM protein 1 isoform X2 229 348 - -
Vimu11g01115 637 Pfam VAD1 Analog of StAR-related lipid transfer domain 404 528 IPR031968 -
Vimu11g01115 637 Pfam C2 domain 82 176 IPR000008 -
Vimu11g01115 637 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 8 511 IPR044655 -
Vimu11g01115 637 Coils Coil 339 366 - -
Vimu11g01115 637 ProSiteProfiles C2 domain profile. 62 177 IPR000008 -
Vimu11g01115 637 MobiDBLite consensus disorder prediction 618 637 - -
Vimu11g01115 637 PRINTS C2 domain signature 96 108 IPR000008 -
Vimu11g01115 637 PRINTS C2 domain signature 141 149 IPR000008 -
Vimu11g01115 637 PRINTS C2 domain signature 120 133 IPR000008 -
Vimu11g01115 637 Gene3D - 229 348 IPR011993 -
Vimu11g01115 637 ProSiteProfiles VASt domain profile. 400 619 IPR031968 -
Vimu11g01115 637 SMART gram2001c 228 294 IPR004182 -
Vimu11g01115 637 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 79 190 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01115 Vimu-Chr11 11852128 11861713 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01115 67 165 C2H2 Transcription Factor Family AT4G21160 25.253 1.23e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01115 - - gmx:100789923 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01115 11 11852128 11861713 Vimu11g01115 11 11852128 11861713 ECH