Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01110 ATGGTTGTGTCTGACAACTATGATACTCAAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGTCACTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAGAAGATTGGGGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCATACCTTGAAACTTCAGCAGCAGCCAAGATGCAGGGTATGGAAGCATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATCAAAACTACTACTTCACCTAAATTGGAGAATGATGTGTCTCAATTTCATTGA 492 0.4187 MVVSDNYDTQREEGIDVRKMMEHKRSHCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLETSAAAKMQGMEACSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTTSPKLENDVSQFH 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01110 163 FunFam Transcription factor bHLH113 family 41 117 - -
Vimu11g01110 163 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 106 IPR036638 GO:0046983
Vimu11g01110 163 Gene3D - 39 113 IPR036638 GO:0046983
Vimu11g01110 163 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 32 132 - -
Vimu11g01110 163 CDD bHLH_AtbHLH_like 48 99 IPR045239 -
Vimu11g01110 163 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 91 IPR011598 GO:0046983
Vimu11g01110 163 SMART finulus 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01110 Vimu-Chr11 11817449 11819162 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01110 20 155 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 55.063 6.43e-54 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01110 - - vun:114178105 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01110 11 11817449 11819162 Vimu11g01110 11 11817449 11819162 ECH