Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01108 ATGGCGTCAAATAGCCAATCACCGCCTCTCGAGATATTAGTTCGAGGACCCGAACAATTTTCTCTCTGGACTGGACCACCCTTCGCCGACGGTCAACCCGCCGTCAAGCTCGAAAAAGTTAACTGCATCAGTGCCAAGTTCAGCGACGATGGATCCAAGCTCATGATCACCAAATCCAACTCGTTGATTTCTGTGTACGACTGCAACACTGCTAAAGAGATTAGGGCTTTTGAAGTTCCCAATGTCGTTGCCGCTACGTTGTCACCCTGTGGTACTTACTTGCAAACCTTTCAGAAACCTTCGGCGCCGCAGGAGAAGAACGTCACGCTGTGGAGAATCGACACTGGTGCTGCTGTTTACCAACAGTCGCAAAAGAACATGACAAAAGGCAATTGGCCTGCGATTCAGTTTAGTTCTGATGAAGCTACTGCGTGTCGGTTGGCAACTAATGAGGTGCAGTTTTTTGACACTGGGGATTTTTCTAAAGGAGTTACCATTCGGTTAAGAGTTCCGGGGGTTGCTGCTGCTGAGCTTTCTAGTTTACCGGGATCCCATGTAGCTGCATTTGTTCCAGAATCCAAGTCATGGAAAGGATCTGGTAAGGCTGTTATCCTGTTGTGTATTTGTGATGCTCAGTTGACTCAAGTGGGGGTTCCTGCAAGTGTACAGATATATGCTAGCAGAAATGCATCTCAAAGTCAACCTGTTGCTCGACGTAGTTTCTTCCGATGTTCAACCACCCAACTTAAATGGAATCATGGCTCAACTGGGCTTCTAGTGGTGGTGCAGTCAGATGTTGACAAAACTAATCAGAGTTACTATGGAGAATCAAAATTATGCTATTTGACAACAGATGGAATGCATGAAGGACTTGTGCCTCTCCGGAAAGATGGGCCTATTCATGATGCTCAGTGGTCATATTCTGGCTTGGAATTTGCTGTTGTGTATGGATTCATGCCTGCTAAAGCAACTTTGTTCGACAAGAAGTGCAATCCTCTTCTAGAGCTTGGAACTGGTCCTTACAACACTATTCGTTGGAACCCAAAAGGGAAATATAAAAAGCAACTTGGAACCACTAAGGCTGAATGGTCTGTGACTAGTGAATGGTCACCAGATGGGTGCTATTTCATGACAGCTACAACAGCTCCAAGGCTTCAAGTTGACAATGGGTATGCCCGTGATGGTGACGATTGGGAGAAGGCTAGGGTTAATGTCTCTGTTGTTTATGGTGTTATGCCACATGATGCTTATTGTGCTGCCAAGGGTGCCCTTACTGTCAAAAACCCAGTCCTGTGCCATCCTTTGCTGCTAGAATCAGCTTCGTATATCACCCAAAGAACCTGTTTGCCCTCGCTCCTCTCCTATGTTGTGAGTGACGAAGTTGTCGGTGGTCTGAGTAGTGATTCATTGCAACTTTGTGTTTGTTGGTGGGATTGGAAGCATGGAAACGTTGCTGGTGAAAAACAATTTGGAACTTGTGGCAGTGACGAAGTTGTCGGTGGTCTGAGTAGTGATTCATTGCAACTTTGTGTTTGTTGGTGGGATTGGAAGCATGGAAACGTTGCTGGTGAAAGGTTGGTTGATTGGAAACCAGAGTCACCCAGTAAGTTTGGTGATATTGCTGAATTAATTAAGTCTCTAAATTTGGTCCAACTTGAAGATAAAAAACCAGCAGGTCAAGGACCACCAAAGTCAACCCAGACTTCCGTAAAAGCCTCTTCTGCCAATCCCCAAGCGCAAAAGCCTGCTGCGTATCGTCCACCACATGCTAAGAATGCAGCTGCTATTCAGGCACAGTTGTTGGGAGAGACTCCTTCAGAATCAATAAGCAAGAATGCATTACGAAACAAGAAAAAGAGGGAAAAACAGAAGGAGAAAAAGGCTGCTTCTGATGCCAGTTCTTCGTAA 1908 0.4565 MASNSQSPPLEILVRGPEQFSLWTGPPFADGQPAVKLEKVNCISAKFSDDGSKLMITKSNSLISVYDCNTAKEIRAFEVPNVVAATLSPCGTYLQTFQKPSAPQEKNVTLWRIDTGAAVYQQSQKNMTKGNWPAIQFSSDEATACRLATNEVQFFDTGDFSKGVTIRLRVPGVAAAELSSLPGSHVAAFVPESKSWKGSGKAVILLCICDAQLTQVGVPASVQIYASRNASQSQPVARRSFFRCSTTQLKWNHGSTGLLVVVQSDVDKTNQSYYGESKLCYLTTDGMHEGLVPLRKDGPIHDAQWSYSGLEFAVVYGFMPAKATLFDKKCNPLLELGTGPYNTIRWNPKGKYKKQLGTTKAEWSVTSEWSPDGCYFMTATTAPRLQVDNGYARDGDDWEKARVNVSVVYGVMPHDAYCAAKGALTVKNPVLCHPLLLESASYITQRTCLPSLLSYVVSDEVVGGLSSDSLQLCVCWWDWKHGNVAGEKQFGTCGSDEVVGGLSSDSLQLCVCWWDWKHGNVAGERLVDWKPESPSKFGDIAELIKSLNLVQLEDKKPAGQGPPKSTQTSVKASSANPQAQKPAAYRPPHAKNAAAIQAQLLGETPSESISKNALRNKKKREKQKEKKAASDASSS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01108 635 FunFam Eukaryotic translation initiation factor 2A 30 185 - -
Vimu11g01108 635 Pfam Eukaryotic translation initiation factor eIF2A 353 391 IPR013979 -
Vimu11g01108 635 Pfam Eukaryotic translation initiation factor eIF2A 239 352 IPR013979 -
Vimu11g01108 635 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2A 353 391 IPR011387 GO:0003743|GO:0006413
Vimu11g01108 635 MobiDBLite consensus disorder prediction 554 635 - -
Vimu11g01108 635 SUPERFAMILY DPP6 N-terminal domain-like 41 384 - -
Vimu11g01108 635 MobiDBLite consensus disorder prediction 561 580 - -
Vimu11g01108 635 Coils Coil 611 631 - -
Vimu11g01108 635 Gene3D - 29 187 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01108 Vimu-Chr11 11770399 11779574 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01108 68 391 Eukaryotic Initiation Factors Gene Family AT5G27640 21.294 5.83e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01108 K15026 - gmx:100811589 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01108 11 11770399 11779574 Vimu11g01108 11 11770399 11779574 ECH