Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01089 ATGGCTGTTGGGCCAGGAATGGATATGCCCATCATGCATGACAGTGATCGCTACGAACTCCTCCGTGACATTGGTTCTGGCAACTTCGGTATAGCCAGGCTCATGAGGGACAAGCACACCGAGGAACTTGTTGCTGTTAAGTATATTGAGAGAGGTGAAAAGGTTTGTCATCTGCCTTCTCTATCCTTCTTCTGCTACTTATACCCCAAATCAATCAACCAACTAACCAACAAGAAGCTAGTTTCTCGTACCCAACCTCTGTTGAACGAGATAGATGAAAATGTACAGAGAGAAATTATAAATCACAGATCTCTGAGGCATCCTAATATTGTGAGGTTCAAGGAGGTTATATTGACACCAACACATTTGGCAATTGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGGCGATTCAGTGAGGATGAGGCACGCTTCTTCTTCCAACAACTTATATCAGGGGTTAGCTATTGTCATGCAATGCAAGTATGCCATCGAGACTTGAAGTTGGAAAACACATTGTTGGATGGTAGTCCAGCTCCTCGTTTGAAGATTTGTGATTTTGGCTATTCAAAGTCCTCAGTGCTACATTCTCAACCAAAATCTACAGTGGGAACCCCTGCATATATCGCTCCAGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGTGCATATCCATTTGAGGATCCCGAGGAACCTAAAAATTTCCGCAAGACAATACATAGGATTTTGAATGTTCAGTACTCAATTCCAGACTATGTTCATATATCTCCCGAGTGCCGTCATCTGATATCAAGGATTTTTGTTGCTGATCCTGCAAAAAGAATAAGTATTCCTGAAATTAGAAACCACGAGTGGTTTTTGAAGAACCTTCCAAGTGATCTGATGGATGGGAATAGCAACAACCAGTTTGAGGAGGCTGATCAACCAATGCAAAGCATTGAAGAAATCATGCAGATAATCAGAGAGGCTACAATTCCTGCAGCTGGATCTCAGTCTCCCAACCATGATCTTACTGGTAGCTTGGATATTGATGAGGACATGGATACAGATCCTGATCTTGACTTAGATAGCAGTGGAGAAATAGTGTATGCTATGTAA 1170 0.4231 MAVGPGMDMPIMHDSDRYELLRDIGSGNFGIARLMRDKHTEELVAVKYIERGEKVCHLPSLSFFCYLYPKSINQLTNKKLVSRTQPLLNEIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECRHLISRIFVADPAKRISIPEIRNHEWFLKNLPSDLMDGNSNNQFEEADQPMQSIEEIMQIIREATIPAAGSQSPNHDLTGSLDIDEDMDTDPDLDLDSSGEIVYAM 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01089 389 SUPERFAMILY Protein kinase-like (PK-like) 11 329 IPR011009 -
Vimu11g01089 389 Pfam Protein kinase domain 90 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01089 389 ProSiteProfiles Protein kinase domain profile. 18 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01089 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Vimu11g01089 389 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Vimu11g01089 389 Gene3D Transferase(Phosphotransferase) domain 1 130 318 - -
Vimu11g01089 389 MobiDBLite consensus disorder prediction 349 382 - -
Vimu11g01089 389 Gene3D Phosphorylase Kinase; domain 1 69 129 - -
Vimu11g01089 389 SMART serkin_6 18 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01089 389 PANTHER SERINE/THREONINE KINASE 17 335 - -
Vimu11g01089 389 FunFam Serine/threonine-protein kinase SRK2E 130 318 - -
Vimu11g01089 389 Gene3D Phosphorylase Kinase; domain 1 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01089 Vimu-Chr11 11615560 11618318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01089 17 316 CBL-interacting serine-threonine protein kinases AT5G25110 41.694 6.11e-66 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vimu11g01089 Pkinase 2.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01089 K14498 - gmx:100796253 665.996