Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01077 ATGGCTCAACCCAGCAGCAACGGCGATCTGAGTCAGCAGCAGGGGCAGCAGCAGGGGCAACAGCAGCAGTGGCCGCAGCCGCATCAGTACCAGCACCAATGGATGACCATGCAGTATCCGGCCACTGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCCCAGCATTACATGCCCTATGTCCACCCTCATTACCCCCCGCCGCCGCCCCCTCCCTCCCACCACCACCATCACAAACAGCCCACCTCATCTCCCGCCGCCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAAAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTCGTTGAGTTCTATTCACGTGCGACGGCTGAGAAAGTCTTGCAGAACTATAACGGCACCATGATGCCAAACACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCCGGGGATAGGCGATCTTCTGATGCTACTTCTGATCTCTCAATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCGAGCAGATTTTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGCTCAAAAGGTTATGGTTTTGTTAGGTTTGGGGATGAAAACGAGAGAACGAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGACCCATGAGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCTCAAGGTTTGTTATTTATGATTTTTATTCTGCATGCTTGTGACACAGTTTTAATTTGCAGGAGTAGGTTGCCTTACTGTCCAAAGGCAATTTCATTGCACTGGCCATTGGCCAATGCCTTGCTGTCCAAAGTTCATTGCATTGCACCAGCTGTGGTATTGGCTGGTGGACACTCGGCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGAGATTCGAACAACACTACCATATTTGTTGGTGGGCTTGATTCTGATATCAGTGACGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCATTGGGAAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGATGCAATTCAGGCAATGAATGGGACAGTAATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATTCCAATGGAGGCCATTATGGTGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATCTAGCCATGCAACCTGCTGCTGCTGCAATTCAAGGGGCTTCCTGA 1422 0.4887 MAQPSSNGDLSQQQGQQQGQQQQWPQPHQYQHQWMTMQYPATAMAMMQQQMMMYPQHYMPYVHPHYPPPPPPPSHHHHHKQPTSSPAASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQGLLFMIFILHACDTVLICRSRLPYCPKAISLHWPLANALLSKVHCIAPAVVLAGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPLGKGCGFVQFADRKNAEDAIQAMNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGYGGHGFAVRQNQDLAMQPAAAAIQGAS 473
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01077 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Vimu11g01077 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Vimu11g01077 473 SMART rrm1_1 95 170 IPR000504 GO:0003723
Vimu11g01077 473 SMART rrm1_1 356 423 IPR000504 GO:0003723
Vimu11g01077 473 SMART rrm1_1 189 263 IPR000504 GO:0003723
Vimu11g01077 473 SUPERFAMILY RNA-binding domain, RBD 92 269 IPR035979 GO:0003676
Vimu11g01077 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 259 IPR000504 GO:0003723
Vimu11g01077 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 420 IPR000504 GO:0003723
Vimu11g01077 473 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 163 IPR000504 GO:0003723
Vimu11g01077 473 CDD RRM2_SECp43_like 187 266 - -
Vimu11g01077 473 MobiDBLite consensus disorder prediction 1 27 - -
Vimu11g01077 473 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 427 IPR000504 GO:0003723
Vimu11g01077 473 Gene3D - 337 459 IPR012677 -
Vimu11g01077 473 FunFam Polyadenylate-binding protein RBP47B 93 173 - -
Vimu11g01077 473 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 83 431 - -
Vimu11g01077 473 Gene3D - 93 173 IPR012677 -
Vimu11g01077 473 FunFam Polyadenylate-binding protein RBP47B 175 278 - -
Vimu11g01077 473 FunFam Polyadenylate-binding protein RBP47 337 453 - -
Vimu11g01077 473 MobiDBLite consensus disorder prediction 65 90 - -
Vimu11g01077 473 SUPERFAMILY RNA-binding domain, RBD 345 451 IPR035979 GO:0003676
Vimu11g01077 473 Gene3D - 174 281 IPR012677 -
Vimu11g01077 473 CDD RRM1_SECp43_like 95 175 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu11g01077 Vimu-Chr11 11448340 11452746 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01077 82 425 Eukaryotic Initiation Factors Gene Family AT1G22760 25.323 8.97e-25 105
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01077 - - gmx:100814564 612.453
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01077 11 11448340 11452746 Vimu11g01077 11 11448340 11452746 ECH