Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu11g01077 | ATGGCTCAACCCAGCAGCAACGGCGATCTGAGTCAGCAGCAGGGGCAGCAGCAGGGGCAACAGCAGCAGTGGCCGCAGCCGCATCAGTACCAGCACCAATGGATGACCATGCAGTATCCGGCCACTGCCATGGCCATGATGCAGCAGCAGATGATGATGTATCCCCAGCATTACATGCCCTATGTCCACCCTCATTACCCCCCGCCGCCGCCCCCTCCCTCCCACCACCACCATCACAAACAGCCCACCTCATCTCCCGCCGCCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAAAACTACCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTCGTTGAGTTCTATTCACGTGCGACGGCTGAGAAAGTCTTGCAGAACTATAACGGCACCATGATGCCAAACACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCCGGGGATAGGCGATCTTCTGATGCTACTTCTGATCTCTCAATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCGAGCAGATTTTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGCTCAAAAGGTTATGGTTTTGTTAGGTTTGGGGATGAAAACGAGAGAACGAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGACCCATGAGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCTCAAGGTTTGTTATTTATGATTTTTATTCTGCATGCTTGTGACACAGTTTTAATTTGCAGGAGTAGGTTGCCTTACTGTCCAAAGGCAATTTCATTGCACTGGCCATTGGCCAATGCCTTGCTGTCCAAAGTTCATTGCATTGCACCAGCTGTGGTATTGGCTGGTGGACACTCGGCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGAGATTCGAACAACACTACCATATTTGTTGGTGGGCTTGATTCTGATATCAGTGACGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCATTGGGAAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGATGCAATTCAGGCAATGAATGGGACAGTAATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATTCCAATGGAGGCCATTATGGTGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATCTAGCCATGCAACCTGCTGCTGCTGCAATTCAAGGGGCTTCCTGA | 1422 | 0.4887 | MAQPSSNGDLSQQQGQQQGQQQQWPQPHQYQHQWMTMQYPATAMAMMQQQMMMYPQHYMPYVHPHYPPPPPPPSHHHHHKQPTSSPAASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQGLLFMIFILHACDTVLICRSRLPYCPKAISLHWPLANALLSKVHCIAPAVVLAGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPLGKGCGFVQFADRKNAEDAIQAMNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGYGGHGFAVRQNQDLAMQPAAAAIQGAS | 473 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu11g01077 | 473 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 94 | 174 | IPR000504 | GO:0003723 | |
Vimu11g01077 | 473 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 188 | 267 | IPR000504 | GO:0003723 | |
Vimu11g01077 | 473 | SMART | rrm1_1 | 95 | 170 | IPR000504 | GO:0003723 | |
Vimu11g01077 | 473 | SMART | rrm1_1 | 356 | 423 | IPR000504 | GO:0003723 | |
Vimu11g01077 | 473 | SMART | rrm1_1 | 189 | 263 | IPR000504 | GO:0003723 | |
Vimu11g01077 | 473 | SUPERFAMILY | RNA-binding domain, RBD | 92 | 269 | IPR035979 | GO:0003676 | |
Vimu11g01077 | 473 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 190 | 259 | IPR000504 | GO:0003723 | |
Vimu11g01077 | 473 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 357 | 420 | IPR000504 | GO:0003723 | |
Vimu11g01077 | 473 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 96 | 163 | IPR000504 | GO:0003723 | |
Vimu11g01077 | 473 | CDD | RRM2_SECp43_like | 187 | 266 | - | - | |
Vimu11g01077 | 473 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Vimu11g01077 | 473 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 355 | 427 | IPR000504 | GO:0003723 | |
Vimu11g01077 | 473 | Gene3D | - | 337 | 459 | IPR012677 | - | |
Vimu11g01077 | 473 | FunFam | Polyadenylate-binding protein RBP47B | 93 | 173 | - | - | |
Vimu11g01077 | 473 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 83 | 431 | - | - | |
Vimu11g01077 | 473 | Gene3D | - | 93 | 173 | IPR012677 | - | |
Vimu11g01077 | 473 | FunFam | Polyadenylate-binding protein RBP47B | 175 | 278 | - | - | |
Vimu11g01077 | 473 | FunFam | Polyadenylate-binding protein RBP47 | 337 | 453 | - | - | |
Vimu11g01077 | 473 | MobiDBLite | consensus disorder prediction | 65 | 90 | - | - | |
Vimu11g01077 | 473 | SUPERFAMILY | RNA-binding domain, RBD | 345 | 451 | IPR035979 | GO:0003676 | |
Vimu11g01077 | 473 | Gene3D | - | 174 | 281 | IPR012677 | - | |
Vimu11g01077 | 473 | CDD | RRM1_SECp43_like | 95 | 175 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu11g01077 | Vimu-Chr11 | 11448340 | 11452746 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu11g01077 | 82 | 425 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 25.323 | 8.97e-25 | 105 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu11g01077 | - | - | gmx:100814564 | 612.453 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu11g01077 | 11 | 11448340 | 11452746 | Vimu11g01077 | 11 | 11448340 | 11452746 | ECH |