Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01072 ATGGAAGAGCGCCACGTGTTTGAAGAGCGTGTCCACGCCAATAGACCCACCGAAGAAACTACCTCACGGAATCCAAATCTTCGTTCGCTTCCCTTTTCTTGCACTGCCCTAATTCCTCAAATTCCCCTCTCTTTATTCTCCCAGATCCCGGACATCGAGGCTGGTCGGCCCCTCGGTTCCAGGCGTGGCTTGGCTAACGGCAAGCAGGACCCCACGCAGGCAGTGGCTGCCGGAATATTCCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGATACCCCCGAGCTCCGCGAGAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGACATTGATCACCATGCTGAAGTTAATTATTTTGTGATCGTCTTCCAAAAGGCATTAACTCCTCTCAATACTATTATTACTTATATTATTGCTGTCATTTTTATTGGATTGGCGAGCAAGAAGATCGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTATTGAAAGAGTTTCAGAAGGCACAACGCCTTGCAGCTGAGAGGGAAACAGCATACACTCCTTTTGTTCCCCAAGCAGTCCTTCCTTCCAGCTATACTGCTGGTGAATTAGGTGTTGGTTCTGATAAATCACCAGAAGAGCGTGCCTTACTCGTGGAATCAAGGAGGCAGGAGGTTTTGTTCTTAGATAATGAGATTGCCTTTAACGAGGCCATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAACGAGATCTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTTTAAAAGCTTCTAAGACCCAAAGATCAAATTCCTCTTTGGAGATATCTTCTAAAGAGGGTTTGACTAATGGCCCAGGCCACAGAATGGGGTTTGATTTAAAAATGATTTTGTATTGA 1056 0.4564 MEERHVFEERVHANRPTEETTSRNPNLRSLPFSCTALIPQIPLSLFSQIPDIEAGRPLGSRRGLANGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNYFVIVFQKALTPLNTIITYIIAVIFIGLASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGELGVGSDKSPEERALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLLKASKTQRSNSSLEISSKEGLTNGPGHRMGFDLKMILY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01072 351 PANTHER SYNTAXIN 72 324 IPR045242 -
Vimu11g01072 351 MobiDBLite consensus disorder prediction 1 17 - -
Vimu11g01072 351 MobiDBLite consensus disorder prediction 314 332 - -
Vimu11g01072 351 MobiDBLite consensus disorder prediction 1 27 - -
Vimu11g01072 351 Gene3D - 65 207 - -
Vimu11g01072 351 SMART tSNARE_6 249 316 IPR000727 -
Vimu11g01072 351 Pfam Syntaxin-like protein 76 203 IPR006011 GO:0016020
Vimu11g01072 351 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 254 316 IPR000727 -
Vimu11g01072 351 SMART SynN_4 60 201 IPR006011 GO:0016020
Vimu11g01072 351 ProSitePatterns Syntaxin / epimorphin family signature. 260 299 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vimu11g01072 351 MobiDBLite consensus disorder prediction 314 334 - -
Vimu11g01072 351 Gene3D - 258 325 - -
Vimu11g01072 351 CDD SNARE_Qa 274 315 - -
Vimu11g01072 351 CDD SynN 69 221 IPR006011 GO:0016020
Vimu11g01072 351 SUPERFAMILY t-snare proteins 69 309 IPR010989 GO:0016020|GO:0016192
Vimu11g01072 351 Pfam SNARE domain 290 326 IPR000727 -
Vimu11g01072 351 FunFam Syntaxin-22 like 247 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01072 Vimu-Chr11 11370981 11374055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01072 51 326 SNARE and Associated Proteins AT5G46860 69.565 4.73e-130 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01072 - - gmx:547656 404.831