Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01070 ATGGAGGGAGCAGGAAGTGGAGGCGGAGAAGTGTCGACGGCGGGGCCGACACCGATTCCGAACGCTAACGCGCCGCCGCCTTTCCTAAGCAAGACGTATGACATGGTGGACGACCCTTCGACGGACTCAATTGTGTCGTGGAGTCCAACGAACAACAGCTTCATTGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTTTTGCCGAAACACTTCAAGCACAATAACTTCTCCAGCTTCGTTCGCCAGTTAAACACCTACGTAAGAGTAAAGTATCTAAATTCCAAAATCAAGAAGTGGATTGTGGGATTTTGTGGTGTTGTGCCACTGTGGCTTGTTATGCATCGCCTTGCATCACATTTTCATAAGCTGCCATTGCGGAGCCCCAAGTTGGTGCTAATCATGGCATTATTGTGCAATTCATGGCATTCTTTGCTCTTGTTTGTAGCAACTCCTGTTCTGTTCTGTCCCACCTCTGTTCTCAAGGGTTTTAGAAAGGTAGACCCGGATCGCTGGGAGTTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACCATATCTAGGCGGAAACCTGCCCATGGTCATAATCATCAACAAGCACAACCAGTGCACGGACAGAGTTCATCGGTTGGGGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAAATTCTCAAGAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAGCAATCTACTGATAACCAACTGCAGACTATGGTTCAGCGGCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAATTTGTACAACAGCAAAATGATAGTAATAGACGCATAACAGAGGCAAATAAAAAACGTCGACTGAAGCAGGAAGGAATTGGTGAAATGGAACATAGAGCTGCTTCTGATGGGCAAATTGTTAAATATCAACCTATGATAAATGAAGCAGCAAAAGCAATAGTAAGGCAAATAATGAAATTGGATGCTTCTCGATTGGAATCTTTCAGTAATAACCCCGATAATTACTTGATTGGTGATCATTCATCACCATCCAGTGAAATGGACAGGGGAAACTCTTTGAGTCGATCTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTAAGGTGCAGTCTTCTTATGTTCCATCTGCAACAAGGACTCAAGGGCACGGTCCTTCAACTGGAAAATCTGAGATTCTATCTTCTCCTCAAGTTGCAGCCTGTGAAGAAGTTACATATCCTAATATAAATGTTTCAGTTGGAGAACCTAATGCACCTGCTATCCCAGTTACTCAAACAGATGAAATCATGCCGGACCTTGCTACAATACCAGATATAGTGGCAGGAAACATTCTCGATATTCCTCAAGAAAATTATATGGCACCAGAAACTGGTGGTGACGGATACATGGATCCTGCTTCATTTGGGGTGAATATGTCACTGCCCCTTGATTTTGATAGTATTTCAACTGAACCAGACATCGATGATTTGTTGAACAATCCTCACTTTTGGGATGATATTGTGCGAACTCCGGTATCAGAGGATATTGAAACGAATGGTCCTGAAGTATTCTATGAGAATGAGGTGCAGCCAACTGAAAATGGATGGGAAAAATCTCAACATATGGACCTACTTACTGAACAGATGGGTTTACTTTCTTCTGATGCAAAAAAAAATTGA 1746 0.4393 MEGAGSGGGEVSTAGPTPIPNANAPPPFLSKTYDMVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYVRVKYLNSKIKKWIVGFCGVVPLWLVMHRLASHFHKLPLRSPKLVLIMALLCNSWHSLLLFVATPVLFCPTSVLKGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHNHQQAQPVHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNDSNRRITEANKKRRLKQEGIGEMEHRAASDGQIVKYQPMINEAAKAIVRQIMKLDASRLESFSNNPDNYLIGDHSSPSSEMDRGNSLSRSSGVTLQEVPPTKVQSSYVPSATRTQGHGPSTGKSEILSSPQVAACEEVTYPNINVSVGEPNAPAIPVTQTDEIMPDLATIPDIVAGNILDIPQENYMAPETGGDGYMDPASFGVNMSLPLDFDSISTEPDIDDLLNNPHFWDDIVRTPVSEDIETNGPEVFYENEVQPTENGWEKSQHMDLLTEQMGLLSSDAKKN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01070 581 PRINTS Heat shock factor (HSF) domain signature 28 51 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g01070 581 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g01070 581 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g01070 581 Coils Coil 221 248 - -
Vimu11g01070 581 SUPERFAMILY "Winged helix" DNA-binding domain 26 92 IPR036390 -
Vimu11g01070 581 MobiDBLite consensus disorder prediction 298 321 - -
Vimu11g01070 581 SMART hsfneu3 24 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g01070 581 MobiDBLite consensus disorder prediction 1 22 - -
Vimu11g01070 581 Pfam HSF-type DNA-binding 28 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu11g01070 581 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 371 IPR027725 -
Vimu11g01070 581 Gene3D - 21 193 IPR036388 -
Vimu11g01070 581 MobiDBLite consensus disorder prediction 300 321 - -
Vimu11g01070 581 MobiDBLite consensus disorder prediction 357 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01070 Vimu-Chr11 11357143 11361879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01070 7 86 HSF AT1G32330 74.419 6.79e-35 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu11g01070 HSF_DNA-bind 3.8e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01070 K09419 - gmx:732544 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01070 11 11357143 11361879 Vimu11g01070 11 11357143 11361879 ECH