Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01067 ATGACACGAAACGCCAACGCGTTTCATAGTATTTCTTCCGAAACGCGTTTTGGACGGCAAATTGTTTGTTTGAACCGTACCAACCTTGCAACTACCGCTATAGCATTTGCTTTTTCCCTTTCTCTCTCTTACCCACTGTTTTTTCTCATTCGCCTGAAAACCTCTTCACCGGCCGGAAAATTGATACTATTTCCGGCGATTTGTCGCCGCTATGAGGAGGATTACTGTTGCCTCCTGATTGAGCTGGTTACATTATCTCAATTTTCTAAGTTTGGTCGTAGAAGGCTTTGGATTTCTCGGAGACCTGGTTTCTACCTTCTACTCGCCGTTTTGGGAGAATGTGTCGAGGCTGAATATATTTCACGATTTTTCTTCCGAGTAACGAAGACGGAGCGTTATAGGGAGCGACTTCGTAATGGAGTGATCCCGGGCATTGTTCCATCTCCAGCGGTGGGAGGAAGAGTACGTGAATCTATGGAAGCTAGAAACGGGTTAGAATATTTGAAACATAAAAGGCTTCAGCGAGCAAAATCTGCTACTGCCAGTGCCACAGCAAAAAACATGGCTAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGTACTTCTTCATCCTGTGGTATGAGGTTTCCTGGTGATGCAAGTAGCTTTTCCCGGCGGAAGGTGGATAAGTTTGACACAAGTGATCTGGCATGGACTGAGAAAATTCCAGAGTGTCCTGTGTATTATCCAACAAAGGAGGAATTTGATGATCCCTTGCTTTATTTACAAAGAATAGCTCCCGAAGCTTCTAAATATGGCATATGCAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAGAGAGCAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAGATTATACATTTCGCGATTTTGAAAAGATGGCAAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCCCATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGGGAACAGCAAATGGAATTTGAAGCATAAGGTTGGGAAAACAATAAAGGAAACTAACTTTACAGGGATTCCCGGAGCCCTGCATCCTCCAGCAACTAGTAATACCCCTCTCTTACCGTCCCCTCCTCGTCCTGAAGGTGAAATTCTGGAAAAGCTTCCTGTATTCTGGATGTTGATAGACACAGAAAACTGGGTGAATTCAGCTGGATTTGGACAGCTGCAACCAGTTAGTTCTTTCTCCTATACTTTCTATTACCTGATAACAGCCATTGAAGCATGGACTCAGCTTCACATTGGGTCTCCTAGCCAAGAGCTTTATTTTATAAGGCTGTAG 1485 0.437 MTRNANAFHSISSETRFGRQIVCLNRTNLATTAIAFAFSLSLSYPLFFLIRLKTSSPAGKLILFPAICRRYEEDYCCLLIELVTLSQFSKFGRRRLWISRRPGFYLLLAVLGECVEAEYISRFFFRVTKTERYRERLRNGVIPGIVPSPAVGGRVRESMEARNGLEYLKHKRLQRAKSATASATAKNMANMMNRSGGDALSTSSSCGMRFPGDASSFSRRKVDKFDTSDLAWTEKIPECPVYYPTKEEFDDPLLYLQRIAPEASKYGICKIISPLSASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGIDYTFRDFEKMANKSFAQRYCSAGCLPAPYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLGNSKWNLKHKVGKTIKETNFTGIPGALHPPATSNTPLLPSPPRPEGEILEKLPVFWMLIDTENWVNSAGFGQLQPVSSFSYTFYYLITAIEAWTQLHIGSPSQELYFIRL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01067 494 PANTHER LYSINE-SPECIFIC DEMETHYLASE 231 393 - -
Vimu11g01067 494 Gene3D Cupin 222 412 - -
Vimu11g01067 494 ProSiteProfiles JmjN domain profile. 239 280 IPR003349 -
Vimu11g01067 494 SMART JmjN_1 238 279 IPR003349 -
Vimu11g01067 494 Pfam jmjN domain 240 272 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01067 Vimu-Chr11 11333884 11340822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01067 232 421 C2H2 Transcription Factor Family AT5G04240 25.893 1.14e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu11g01067 JmjN 5.7e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01067 - - vra:106765852 461.455