Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01066 ATGGCAGAAATGAAGGCGGATACTGGGGCTCTGCAAGATGAGACTGGGGTGTTGAGACAAGATTTTGCAGCGATGCGCCAGGATATCCAGGAGATTTTGAGAATGTTGGGGGATCGTAATCGCCACCAAGACGGCCAGCACAATGATGGAACAGCCTTTTTAAAGAAGGTTGTATCCACTCCTTCTTTTGAGCATTCATCTTGGGTTGCTTGGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAAACATCAATTCCGGGAGTAACTGAACCCATGCTATACATTGGAATGCTATTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACATGGTATGGCATTCCAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTTTGTCAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGAAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTTCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGCGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCGCAGAGATCCTTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGAAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTGTTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCTCAGGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATGTAGCTTATGTTGACTGTGAATGTCACCTGCATCCAGTATGCCTTCGCCATGATGTAGAATCTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAAAGAGATACTTAAGGAGATGAAAAGTGAAATAAACATCTATTCATGCCCTTTGTCGAACATGTTCCAGATGGCTGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTACTGCTAATTTTTGTACCACCTCAAAGCTGTCAACAAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGTATCTTCTGCTTCATCTACGCCATGTTCTCTTTCCAAACCTCCTGAGATCTCTGCTTCCAATATCGACGAGGTGCATGCTAACTTTAAATTAGGCAGTCCTGATTTTGAAGAGAATTGTGAAAGAATATCCAATAATGCTTCTGAGTCTTTTCAATCCTCTCTTCAGTATGAATGCCCTAATAAATCTATGGGTAATGTGCATAGATTAGAGAAGAAGCTTATTGTGGATAACAAGAGTGATGATTCTGATTCAGGGATTTTTAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGAGGTGCTACGTTTTCAACAAATTCTGGACAGCAGGAACTCAAACAATTGAAGAAAGACCTTGACGAAGGAAGGAGTGTGGCACAAGTAGATATGAGCAAAAGAAAGGAAAGGAGTTATAAATATAGTGAGGGTGTTAGTCATAAGGTTAATAGTGGGGAAATTTCCTCGAGGGATAAATTTGAAAGGGGAAATAGCATTCCCGTATCCGTAAGATATAAGAAGCGAAGTAATGAGGAAGTTAGTAGACGAGGACATAATTGCGGGAGAGATAGGTTGGTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAGCTCGAGACCCTTCATTTATGGGATTGAATTGA 1992 0.4132 MAEMKADTGALQDETGVLRQDFAAMRQDIQEILRMLGDRNRHQDGQHNDGTAFLKKVVSTPSFEHSSWVAWKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLRRDPLLPHEELLCKEAMLLYETLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYVAYVDCECHLHPVCLRHDVESLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILKEILKEMKSEINIYSCPLSNMFQMAEANGYTPYCEMKFDSTANFCTTSKLSTNNQEHMRSQFVSRPEVSSASSTPCSLSKPPEISASNIDEVHANFKLGSPDFEENCERISNNASESFQSSLQYECPNKSMGNVHRLEKKLIVDNKSDDSDSGIFRVKRPSSLKAERRNIRGATFSTNSGQQELKQLKKDLDEGRSVAQVDMSKRKERSYKYSEGVSHKVNSGEISSRDKFERGNSIPVSVRYKKRSNEEVSRRGHNCGRDRLVHSIEVAPKRLKARDPSFMGLN 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01066 663 ProSiteProfiles JmjC domain profile. 65 235 IPR003347 -
Vimu11g01066 663 PANTHER LYSINE-SPECIFIC DEMETHYLASE 62 587 - -
Vimu11g01066 663 MobiDBLite consensus disorder prediction 569 593 - -
Vimu11g01066 663 Pfam C5HC2 zinc finger 315 366 IPR004198 -
Vimu11g01066 663 Pfam JmjC domain, hydroxylase 95 218 IPR003347 -
Vimu11g01066 663 MobiDBLite consensus disorder prediction 569 592 - -
Vimu11g01066 663 SUPERFAMILY Clavaminate synthase-like 51 252 - -
Vimu11g01066 663 SMART cupin_9 65 235 IPR003347 -
Vimu11g01066 663 Gene3D Cupin 21 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01066 Vimu-Chr11 11325427 11332618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01066 63 249 C2H2 Transcription Factor Family AT5G04240 47.059 1.55e-52 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu11g01066 JmjC 1.8e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01066 - - vum:124841332 1146.72