Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01060 ATGGAGGATGAATCTAATCCCACACTCCATGTTGGTATTACTGCATTTCCACTTCCCCAAAAAGGCAGGAGGGAAGACGGGGATGACCAAGAGAATCAAGGAAGTCCAAAAAGGCAGAAGAGAGATGAGGTTGCTGAGGAGCTCAAGAATGAGTTTCAGGAGAATATCAATATCTATGAGGGTGATAACTCTGAAGAAAGATATGAAGAAACAGAAGAGAAACCGATGGAAGTTTTGATGGACACCACATTAGATGCTCAAGAATGTGACTCAAAAAATGTGGAAAATGATTCTTCTAGTGATAGTTCAGATGACAACAACCATTATGACGATAACTCTGATTTTATTGACGAGCCACATATGGCTACAAATCCTGTTAAAAGTTCAGAGAACAGTGAGGAAGAAATTGAGGAAAATGCCTCTAAAACTCCGCAAGTAAATCTTGAAATGCTAACTACTTTGAAAGAACGAAGTGCTGGATCAAAGACAATATATACTAAGAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACGGATGAGGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACAGAAGAAGCAGCGCTAAAAGCACTTAAGTTAAATAATACAGAATTATTGAGATGTCGCATCAGAGTTGGTGTAGCTCGAGAAAGGCAAAAATATACCCCCAACAGAAGTTTCCATGTTAATTATTTTAGCAACAAATATCAAGGTAGTGAAAGAATTCAGCCGGTGAGATGTTCAGAGATTTCAGAAGATTGTGAGCAAGAAACTGAGGAAAAAGTCTCCAAAGCTGTTCAGACAATTGAACAAAAAGCTACTTCGAAGACAATATATGCTAGAAATTTGTCTTATAGTGTGGAGAGGGATGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACAAAGAGATCATAAAGGGAGGTCAAGAGGCTTTGGGCATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAGGCTCTTGGGTTGGATAATAAAAAATGGTTCGGACGATGGATCAGTGTTGGCATAGCTCAAGAAAGGAGTGAATATGCCTCCAATAGAAGTTTTAGCAACTGGAGCAATTCATTCAATAAGCACGAAAGAATCGATCCCATCAAAAGGACATGGAATTCAGAGTCCTGTGAGGAAGATATTGAGGGAAAAGCCGTAAAAGATCCTTGGAAAACTTCTAGATTGTTGGCTACTCTGAAAGAAGAAAATGCTTCATCAAAGACAATATATGTCAAAAACTTGTCATACAGAGTGGAAAAGGCTGATTTGGAAAATTTTTTCAAAGAATGTGGAGAAATCGTCGAAGTTAGGCTACACAGAGATAATGAGGGGAGGTTAAAAGGCATTGGACATATTACGTTTGCAACAGCAGAAGCTGCACTAAAAGCTCTTGAGTTGGATAATACAGAGTTGTTGAGACGTTGCATTGTAATTCAAATAGCTCGAGGAAAGGATGAATGTACCTGGAATAGAAGCAACTCATTCCAAAAGCATGAAAGATTTCAGCCTATGAAGGCTACAGAGCATTTAGAGGACTGTAAGGAAGAAATTGAGGAAAAAGCTCGCGAAAGTCCTCATGAAAGTGCAAAATGTGATTCTGAAATTGAGAATACAACTTACACTCGCTGGGAATGGCAAGATCAAATGCTGATAGCTTGGCTTCAACCTTATGTCTATCTCTTTTACCTCAATTTATTGGCTGCATGCACCTTTCGAAGCATTTGTAGAAGAACCATAATTACTTTCAAGCTCACAGAAGCTAAATCTCATTTTTCCGAACTGAATTAA 1881 0.386 MEDESNPTLHVGITAFPLPQKGRREDGDDQENQGSPKRQKRDEVAEELKNEFQENINIYEGDNSEERYEETEEKPMEVLMDTTLDAQECDSKNVENDSSSDSSDDNNHYDDNSDFIDEPHMATNPVKSSENSEEEIEENASKTPQVNLEMLTTLKERSAGSKTIYTKNLSYSVERADLEDLFKECGEIVDVRLHTDEEGRFRGFGHVEFATEEAALKALKLNNTELLRCRIRVGVARERQKYTPNRSFHVNYFSNKYQGSERIQPVRCSEISEDCEQETEEKVSKAVQTIEQKATSKTIYARNLSYSVERDDMEILFKECGEIVDIRLQRDHKGRSRGFGHVQFATTEAAQKALGLDNKKWFGRWISVGIAQERSEYASNRSFSNWSNSFNKHERIDPIKRTWNSESCEEDIEGKAVKDPWKTSRLLATLKEENASSKTIYVKNLSYRVEKADLENFFKECGEIVEVRLHRDNEGRLKGIGHITFATAEAALKALELDNTELLRRCIVIQIARGKDECTWNRSNSFQKHERFQPMKATEHLEDCKEEIEEKARESPHESAKCDSEIENTTYTRWEWQDQMLIAWLQPYVYLFYLNLLAACTFRSICRRTIITFKLTEAKSHFSELN 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01060 626 SMART rrm1_1 298 369 IPR000504 GO:0003723
Vimu11g01060 626 SMART rrm1_1 439 510 IPR000504 GO:0003723
Vimu11g01060 626 SMART rrm1_1 163 234 IPR000504 GO:0003723
Vimu11g01060 626 SUPERFAMILY RNA-binding domain, RBD 294 384 IPR035979 GO:0003676
Vimu11g01060 626 SUPERFAMILY RNA-binding domain, RBD 155 258 IPR035979 GO:0003676
Vimu11g01060 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 440 507 IPR000504 GO:0003723
Vimu11g01060 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 364 IPR000504 GO:0003723
Vimu11g01060 626 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 232 IPR000504 GO:0003723
Vimu11g01060 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 373 IPR000504 GO:0003723
Vimu11g01060 626 MobiDBLite consensus disorder prediction 1 142 - -
Vimu11g01060 626 Gene3D - 254 381 IPR012677 -
Vimu11g01060 626 Gene3D - 382 523 IPR012677 -
Vimu11g01060 626 Gene3D - 79 247 IPR012677 -
Vimu11g01060 626 MobiDBLite consensus disorder prediction 88 117 - -
Vimu11g01060 626 Coils Coil 485 505 - -
Vimu11g01060 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 238 IPR000504 GO:0003723
Vimu11g01060 626 SUPERFAMILY RNA-binding domain, RBD 432 525 IPR035979 GO:0003676
Vimu11g01060 626 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 438 514 IPR000504 GO:0003723
Vimu11g01060 626 MobiDBLite consensus disorder prediction 21 50 - -
Vimu11g01060 626 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 420 531 - -
Vimu11g01060 626 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01060 Vimu-Chr11 11236101 11249356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01060 157 517 Eukaryotic Initiation Factors Gene Family AT2G36660 24.793 7.23e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01060 - - pvu:PHAVU_003G282900g 892.493