Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01047 ATGGATTCCACTCTCTCTTTCCACACTCCAACTAACAATGCCATCTCACAACCGCAACAACCGCCGTCTCCTCCGCCGGCTCACAACTCACATTCGCAACCCGAACTCTTAGTTCCCAAACCCGAACCCTTCTGGGCCTCTGGCCATGACGATATTGGAGACGAACTCGACCTATTCACTGAGTTCAACCGAGTTACTGAGTTGTTTCACCTTGCCTTCGGAGGCACCAATGTCGTCTTTCCCCCCTACTCCTTCGGACCTCAACCTGCTGCACCCGCATGCTCCGACCCGCTTCCTGCTGCGGATGTCCATTCCTCGGTTCAGGAACACCCGAATTCGTCGTCCCCCGCCACCGACGCCTCCAGAGCGATCGTCCCCATGGAGGACCTCACGGTGAGCGTTGCGCCGCGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTTCGGGTAATGGGTCTGTCGTTGAGGGAACAGGCGCAGCTGCGGGAGACGGTGAGGCGCACGCGCTTGGTGTACGACTCGCTGCGCGTGTACACCGCTGTGGAGGAGGAGAGGCGGGTGGCCGCCTTGGCGGCGGAGGCAGCGGCGAGGGAGGCTGCAAGGGAGGCGGCGAGGGAGGCGTCGGTCAAGGAGGAGCAGGAAGAGGAGAAAGTGGTGGAGGGCCGGAGTCGACGTCTCCGCGGGGACCTGCGAGCTGCTGGACTGATGCGGGAGCGTGGACTGTGGCTGAACCGCGAGCAGCGAATCGTTGGGGCGATCCCTGGGATTTTGGTGGGGGATTTGTTCCTTTTCAGGATGGAGTTGTGTGTGCTTGGGTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTGCAAGTATGAGCTCCAGTGGGGAGCCTATAGCCACCAGTGTGATTGTTTCTGGGGGTTATGAGGATGATTCTGAGGTTGGTGAGGATATATTATACACTGGTCATGGAGGGCAGGGGAAAAATTCGTCTAAGCAGGTTGCTGACCAGAAGTTGGAGTCGGGGAACCTTGCATTGGAAAGGAGTATGCATTATGGTGTGGAGGTGAGGGTTATTCGTGGGATGAGGTATGAGGGGAGTGCTTCTGCTTCTGGTAAGGTCTATGTGTATGAAGGACTGTATAAGATTACTGATTGCCAGTTCGTTGAGGGGAAGTCTGGTTTTCGGGTTTACAAGTTTACGCTTTCCAGGATTCAGGGGCAGGCTACGACGGGAAGTGCTATTTTGAAGAAAGCTAGGGATATTAGGAGGAATGTAATGGATTCGAATACTGTGCGTTGTCTTTCTGCTGATATGTCCAACAAGAAGGAGAATGTTCCTGTTCGCCTTTTTAACGACATAGATGATGATCGGGATCCTCTTAACTATGAGTATCTTGCCAAGACTATTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAATGTTACTGGTTGTGACTGTGTGAATGGTTGTAGTGATGGATGCCTTTGTGCTAAAAAAAATGGGGGTGATTTTCCTTACACTATGCAGGGACATCTTGTGAAAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCTTGTACTTCTCAGTGTCGTAATCGTGTTTCGCAGAAGGGACTGAAATATAGGTTGGAAGTGTTTAGGTCCCTGCAGACATCTTGGGGTGTTAGGTCTCTGGACCTTATTCAAGCCGGTACTTTTATATGCGAGTTTTCTGGGGTTGTTTTGACAAGGGAGCAGGCGCAAATCTTTGCAATGAATGGTGACTCTTCGATATATCCCAATAGGTTTTCAAAAAGATGGGCGGAATGGGGGGATTTGTCTCAAGTAGACCCAAAATATGTGTGTCCATCATATCCATCTATTCCTCCTTTAGATTTTTCTCTGGATGTGTCGACAATGAGGAATGTTGCTTGCTACATGAGCCACAGTTCATCTCCAAATGTTTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCACATCTTATGCTATTTGCAATGGAGAATATCCCTCCCATGAGAGAGCTCAGCCTTGATTACGGCGTAGCTGATGAGTGGACAGGAAAGCTCTCTATATGTAACTGA 2091 0.5079 MDSTLSFHTPTNNAISQPQQPPSPPPAHNSHSQPELLVPKPEPFWASGHDDIGDELDLFTEFNRVTELFHLAFGGTNVVFPPYSFGPQPAAPACSDPLPAADVHSSVQEHPNSSSPATDASRAIVPMEDLTVSVAPRRKQSRQKELVRVMGLSLREQAQLRETVRRTRLVYDSLRVYTAVEEERRVAALAAEAAAREAAREAAREASVKEEQEEEKVVEGRSRRLRGDLRAAGLMRERGLWLNREQRIVGAIPGILVGDLFLFRMELCVLGLHGQIQAGIDYLPASMSSSGEPIATSVIVSGGYEDDSEVGEDILYTGHGGQGKNSSKQVADQKLESGNLALERSMHYGVEVRVIRGMRYEGSASASGKVYVYEGLYKITDCQFVEGKSGFRVYKFTLSRIQGQATTGSAILKKARDIRRNVMDSNTVRCLSADMSNKKENVPVRLFNDIDDDRDPLNYEYLAKTIFPQFVFHQSGNVTGCDCVNGCSDGCLCAKKNGGDFPYTMQGHLVKGKPLIFECGPFCSCTSQCRNRVSQKGLKYRLEVFRSLQTSWGVRSLDLIQAGTFICEFSGVVLTREQAQIFAMNGDSSIYPNRFSKRWAEWGDLSQVDPKYVCPSYPSIPPLDFSLDVSTMRNVACYMSHSSSPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01047 696 MobiDBLite consensus disorder prediction 101 122 - -
Vimu11g01047 696 Gene3D - 247 409 IPR036987 -
Vimu11g01047 696 ProSiteProfiles YDG domain profile. 250 400 IPR003105 -
Vimu11g01047 696 SMART G9a_1 245 404 IPR003105 -
Vimu11g01047 696 SUPERFAMILY SET domain 429 695 IPR046341 -
Vimu11g01047 696 ProSiteProfiles SET domain profile. 540 683 IPR001214 GO:0005515
Vimu11g01047 696 Pfam SAD/SRA domain 249 404 IPR003105 -
Vimu11g01047 696 SMART set_7 540 689 IPR001214 GO:0005515
Vimu11g01047 696 Pfam Pre-SET motif 435 532 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu11g01047 696 MobiDBLite consensus disorder prediction 106 120 - -
Vimu11g01047 696 SUPERFAMILY PUA domain-like 231 413 IPR015947 -
Vimu11g01047 696 Pfam SET domain 552 683 IPR001214 GO:0005515
Vimu11g01047 696 ProSiteProfiles Pre-SET domain profile. 479 537 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu11g01047 696 SMART preset_2 432 524 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vimu11g01047 696 MobiDBLite consensus disorder prediction 1 48 - -
Vimu11g01047 696 MobiDBLite consensus disorder prediction 1 16 - -
Vimu11g01047 696 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 63 696 IPR025794 GO:0016571
Vimu11g01047 696 Gene3D SET domain 410 696 IPR046341 -
Vimu11g01047 696 Coils Coil 195 216 - -
Vimu11g01047 696 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 106 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01047 Vimu-Chr11 11117110 11119386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01047 119 685 Su(var)3-9 homologs AT5G04940 37.138 1.99e-102 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu11g01047 SAD_SRA 2.1e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01047 K11420 - gmx:100785015 945.266