Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01038 ATGAGTGGTGGCAGGAAGAGGAAGCTGCGTTTAAGCAAGATCTACTCATTCGGGTGCTGCAAGGCATCTTTCAAGGGAGATGATTCACAGATTGGAGGAAAAAATTATTCCAGGGTGGTGTTCTGCAATGAGCCAGATATCTTTGAGGATGGTGTTAAGAATTTTGCAGATAACTCTGTCAGATCTACAAAATATACTCTTGCAACTTTCTTTCCTAAATCTTTGTTTGAACAGTTTAGGAGGGTGGCAAACTTCTATTTTTTGGTCACCGGCACCTTGGCCTTAACAAAACTTGCTCCATATACTGCTGCCAGTGCTATCTTTCCACTGATTGTTGTTATTGGAGCTACTATGGTGAAAGAAGGTATCGAAGACTGGCGCAGGAAAAAACAGGATATAGAGGTGAACAATAGAAGAGTTAAAGTTCATAAAGTTGGTGGTATTTTTGAATATACTGCATGGAAGAATCTGAGGGTGGGGAATATAGTGAAGGTAGAGAAGGACGAATTCTTCCCGGCTGACCTGCTGCTGCTTTCATCCAGTTATGAGGATGCTGTTTGCTATGTTGAGACCATGAATTTAGATGGGGAGACAAATTTGAAGTTAAAACAAGGGTTAGAGATAACATCTTCTTTACAGGAGGATCTTAACTTCCAAAAATTTAAAGCTACAGTGAAATGTGAAGACCCCAATGCAAATTTGTATTCATTTGTTGGGAGCATGGAGTTTGAAGAGAAGAATTATGCCCTTTCTCCTCAGCAACTTCTTCTCCGTGACTCTAAACTTCGTAATACAGACTACATTTTTGGAGCTGTCATTTTCACTGGTCATGACACTAAGGTTATTCAAAATTCTACTGACCCACCTTCAAAAAGAAGTAGAATTGAGAAGAAGATGGACAAAGTCATCTATTTCTTGTTTTGTATTTTGTTTTTAATGGCATTTGTTGGATCTATTTTCTTTTGCATTGCAACTAAAGATGACTTCCAAAATGGGTTGATGAAAAGATGGTATTTAAGACCAGACGATTCTGCTGTTTTCTTTGACCCAAAAAGACCAGCTGCTGCTGCTTTCTTTCATTGTTTGACAGCCTTAATGTTGTATGGGTTCTTTATTCCTATCTCTTTGTATGTGTCAATAGAAATGGTCAAAGTTCTTCAGAGTATTTTCATCAATCAAGATATCCATATGTACTACAAGGAAGCAGACAAACCAGCCCGAGCTCGTACTTCTAATTTGAACGAGGAGCTTGGGCAGGTTGATACAATACTTTCTGACAAGACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCTATTGCTGGGGTAGCATACGGCTGTGGTGCTACAGAGGTTGAGAAGGCCATGGGTAGAAGAAAAGGTTCACCACCAATTCATGAGCATGATATTGAATCAGAAGCACATAACATTAGGGGTTCGCTTGATAAAAAAGCACTCATTAAAGGTTTTAACTTTGATGATGAAAGAATAAGAGATGGACATTGGGTAAACGAGCCTCATGCAGATGTTATCCAGAAGTTTTTCCGCGTGTTGGCTGTATGTCATACAGCCATAACAGAAGTGAATGAAGAAACTGGAAATGTTTCATATGAGGCTGAATCCCCAGATGAAGCCGCATTTCTGATTGCAGCCAGAGAACTTGGTTTTGAATTCTACAGAAGGGGTCAGACTAGTTTATCGACATTTGAGTTGGATCCAGTTTCTGGCAATAAAGTTGAAAGTAAGTACTGTTCAACAAAAAGAGCTTTAAATAGCACCTTTCACTATCTGAAGTTGGCATTGATATCTTCACATGGCCAGTTTACTGTAGCTGCTATAGAGAAATACAAGCTTCTCAATGTTTTGGAATTCAATAGCTCAAGGAAGCGAATGTCAGTGATAGTGGAAGATGAAGAAGGGAAGATTTTGCTTCTCTGCAAAGGTGCAGACAGCATCATGTTTGAAAGACTTGCCAAGAATGGGAGGGAATTTGAAGAGAAAACCATGGAGCACGTGCATGAATATGCTGATGCAGGTCTGAGAACCCTTATACTGGCCTATCGTGAGCTTGGTGCAGAAGAATACAAGGAGTTTGATAATAAATTCTCCAAGGCCAAGAATTTAGTCAGTGCTGATCAGGAGAAACTGATTGAGGAAGTAGCAGATAAGATTGAGAAGAACCTGGTCCTTCTTGGTGCCACTGCTGTGGAGGACAAGCTCCAAGATGGGATTATAATTCATTTGGATAGTCCAGAAATTCAAGCACTAGAGAAAAATGGGGACAAGATGGCCATTGCCAAGGCATCAAGGCAAAGTGTCCTCTTTCAGATATCTGAAGGTGCTGCACAACTCACTGCGTATAGAGGGAGCTCTCAGAAGGCTTTTGCTCTGATTATTGATGGAAAATCACTTGTTTATGCACTTGAAGACAATATAAAGAACATGTTTCTGGAGCTAGCAATGCATTGTGCATCTGTTATTTGTTGTCGCTCATCCCCAAAGCAGAAGGCACTGGTTACTAGATTGGTTAAATCTGGAACTGGGAAAACAACCTTAGCCATTGGGGATGGAGCTAACGATGTGGGAATGCTTCAAGAAGCAGATATAGGGGTTGGTATAAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCTAGTGATATTGCAATTGCACAATTCCGGTATTTGGAACGGTTACTCCTGGTTCACGGACACTGGTGTTACAGAAGGATCTCGTCTATGATATGCTACTTTTTCTACAAGAATATCACATTTGGTTTCACTCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGACAACCAGCTTACAATGACTGGTTTTTGTCTCTCTATAATGTCTTCTTTTCATCACTTCCTGTGGTTGCACTTGGGGTGTTTGACCAGGATGTCTCCGCTCGGTACTGCCTGAAGTTTCCTTTGTTATATCAAGAAGGAGTACAGAATGTTCTATTCAGCTGGCGTAGAATACTCAGCTGGATGCTTAATGGATTTATCAGTGCCTTAATAATTTTCTTCTTCTGCACAAAAGCGATGGAGCTCCAGGCCTTCGATGCAGAGGGTAGAACTGCCGGAAAGGATATACTGGGCGTAACAATGTACACCTGTGTAGTTTGGGTTGTAAACTTGCAAATGGCACTAGCTATAAGTTACTTCACCTTGATCCAACATTTTTTCATCTGGGGTTCCATTCTTTTCTGGTATATTTTTCTCATGGTATATGGAGCAATGCCCCCACACTTTAGTACAAATGCTTACAAAGTCTTCATTGAAGCTCTTGCTCCATCCCCTTCCTATTGGCTTGTGACATTCTTTGTGGTTATCTCAACCCTTATACCATACTTCTCCTACGCAGCAATTCAGATGCGGTTCTTTCCCATGTACCATGAACTAGTACAATGGATAAGGTATGAAGGGAAGATTAAGGATCCTGAGTTTTGTGATATGGTGCGGCAGAGATCATTGCGGCCAACAACCGTGGGTTCAACAGCACGCTTGGCTGCTAAGGCTCACCACGTAAGAGACAGAAATGTTAAACAGTAG 3570 0.4092 MSGGRKRKLRLSKIYSFGCCKASFKGDDSQIGGKNYSRVVFCNEPDIFEDGVKNFADNSVRSTKYTLATFFPKSLFEQFRRVANFYFLVTGTLALTKLAPYTAASAIFPLIVVIGATMVKEGIEDWRRKKQDIEVNNRRVKVHKVGGIFEYTAWKNLRVGNIVKVEKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLEITSSLQEDLNFQKFKATVKCEDPNANLYSFVGSMEFEEKNYALSPQQLLLRDSKLRNTDYIFGAVIFTGHDTKVIQNSTDPPSKRSRIEKKMDKVIYFLFCILFLMAFVGSIFFCIATKDDFQNGLMKRWYLRPDDSAVFFDPKRPAAAAFFHCLTALMLYGFFIPISLYVSIEMVKVLQSIFINQDIHMYYKEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGCGATEVEKAMGRRKGSPPIHEHDIESEAHNIRGSLDKKALIKGFNFDDERIRDGHWVNEPHADVIQKFFRVLAVCHTAITEVNEETGNVSYEAESPDEAAFLIAARELGFEFYRRGQTSLSTFELDPVSGNKVESKYCSTKRALNSTFHYLKLALISSHGQFTVAAIEKYKLLNVLEFNSSRKRMSVIVEDEEGKILLLCKGADSIMFERLAKNGREFEEKTMEHVHEYADAGLRTLILAYRELGAEEYKEFDNKFSKAKNLVSADQEKLIEEVADKIEKNLVLLGATAVEDKLQDGIIIHLDSPEIQALEKNGDKMAIAKASRQSVLFQISEGAAQLTAYRGSSQKAFALIIDGKSLVYALEDNIKNMFLELAMHCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRILSWMLNGFISALIIFFFCTKAMELQAFDAEGRTAGKDILGVTMYTCVVWVVNLQMALAISYFTLIQHFFIWGSILFWYIFLMVYGAMPPHFSTNAYKVFIEALAPSPSYWLVTFFVVISTLIPYFSYAAIQMRFFPMYHELVQWIRYEGKIKDPEFCDMVRQRSLRPTTVGSTARLAAKAHHVRDRNVKQ 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01038 1189 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Vimu11g01038 1189 Pfam Phospholipid-translocating ATPase N-terminal 41 104 IPR032631 -
Vimu11g01038 1189 Pfam Cation transport ATPase (P-type) 523 660 - -
Vimu11g01038 1189 Gene3D - 590 733 IPR023299 GO:0000166
Vimu11g01038 1189 Pfam Phospholipid-translocating P-type ATPase C-terminal 885 1135 IPR032630 -
Vimu11g01038 1189 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 500 736 IPR023299 GO:0000166
Vimu11g01038 1189 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 1146 - -
Vimu11g01038 1189 NCBIfam phospholipid-translocating P-type ATPase 617 1142 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vimu11g01038 1189 NCBIfam phospholipid-translocating P-type ATPase 55 570 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vimu11g01038 1189 NCBIfam HAD-IC family P-type ATPase 829 939 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu11g01038 1189 SUPERFAMILY Calcium ATPase, transduction domain A 142 283 IPR008250 -
Vimu11g01038 1189 SUPERFAMILY HAD-like 419 912 IPR036412 -
Vimu11g01038 1189 FunFam Phospholipid-transporting ATPase 116 286 - -
Vimu11g01038 1189 Gene3D - 112 287 - -
Vimu11g01038 1189 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1135 IPR023298 -
Vimu11g01038 1189 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Vimu11g01038 1189 PRINTS P-type cation-transporting ATPase superfamily signature 857 876 - -
Vimu11g01038 1189 CDD P-type_ATPase_APLT_Dnf-like 57 1017 - -
Vimu11g01038 1189 Gene3D - 734 897 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01038 Vimu-Chr11 11017706 11024381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01038 1 1183 Primary Pumps ATPases AT1G68710 68.417 0.0 1762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01038 K01530 - gmx:100781421 2065.43