Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01035 ATGCATATGTTACCATTATCACCATCACCATCACCATCACCGTCACCGGTGTCATTCACCACCGCCCCGCCACCACAGTTATCTTCTCCCACACTACCTATTTCAACTTCACTATCACCATTATTCTCACCATCACTCCCACCATTACCATCTCAGTCCTTACCTCCGGCTTCCTCTCCACCGGCACCACCACCACTGTCACTATCACTATCACCACAATCGTTGAGTTTGCCACCGGCATCAGTTTCTTCCCCTTCTCCTCAGAGTTCTTCTCCTTCTCCAGCAGCATCTGCTACACCTGTAAGTAGTAGTGCACCTCCTCCACCTTCTAGGACAAGTCCTTTAGATTCTCATTCTACTCCATCACACACTTTTGCATTGGCTCCACCACCTCGATCAGCAAAAGATTCTCACCAACGAAGCAGTGGTGGCACTGGTGCAGTGGCTTTTGTTGGTGTAGTGACAGCAATTGTATTGTTTGGGTTCATTGGCATTGCTATTTGGTGCCTGAGGAGGCAAAAGAAAAGGATTTCTAAGACTGGTGGCTATGACTTCCCATCCCCTCTTGGCTCAACATCTGACTCAGATTTGTCCTTGCTTAAGATCCGTTCTTCAGCTCATCGTTTGCAAAGAGCTTCTTCTGGCGGTAATACAGCATCAGGACTGGGAAACTCAAGGTCATTCTTTGCATATGAAGAACTAATGAAGGCCACAAACAATTTTTCAACTCAAAATCTTTTGGGTGAGGGAGGGTTTGGTTTTGTGTATAAAGGATCACTTCCAGATGGGAGAGAGGTAGCAGTTAAGCAACTACAGATTGAAGGAAGTCAAGGAAAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGCCGCATACATCATCGTCATTTAGTTTCCTTGGTAGGATACTGCATTTCAGAGAACAAAAGACTACTTGTATATGACTATGTCCCCAACAGTACCCTTTATTTTCATCTTCATGGGGAAGGTATGCCAGTGCTGGAGTGGACAAACCGTGTTAAAATTGCGGCTGGAGCAGCCAAAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGTCAGCAAACATACTTTTAGACTATAACTTTGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAGATTAGCAGTTGATGCAAATTCACATGTAACCACACACGTGGTGGGAACTTTTGGATATGTTGCACCTGAATATGTATCAAGTGGTAAATTGACAGAGAAGTCAGATGTATACTCCTTCGGAGTCATGCTTTTGGAGCTCATAACTGGAAGAAAGCCAGTGGATGTATCTCAACCAGTGGGTGAAGAGAGTCTAGTTGAATGGGCTCGACCCTTGCTAAATGATGCACTTGAGAGTGAGGAATTTGAGATTTTGACAGATCCAAAGCTAGGAAAAAAGTACGTTGAAAGTGAAATGATTTGCATGGTTGAAGTTGCTGCTGCTTGCGTGAGACATTCATCTGCCAGAAGACCTCGGATGGGACAGGTTGTTAGAGCTTTTGATGGTTTAGCTATGTGTGATCTTTCAAATGGAATGAGAGTTGGGGATTCTACGCAGCAATCCGCAGAAATAAGATTATTACGTAGAATGGCATTTGGTTACAATTCAGAATTTTTGAGCCACACAAGTTTGAATGAGTAA 1683 0.4385 MHMLPLSPSPSPSPSPVSFTTAPPPQLSSPTLPISTSLSPLFSPSLPPLPSQSLPPASSPPAPPPLSLSLSPQSLSLPPASVSSPSPQSSSPSPAASATPVSSSAPPPPSRTSPLDSHSTPSHTFALAPPPRSAKDSHQRSSGGTGAVAFVGVVTAIVLFGFIGIAIWCLRRQKKRISKTGGYDFPSPLGSTSDSDLSLLKIRSSAHRLQRASSGGNTASGLGNSRSFFAYEELMKATNNFSTQNLLGEGGFGFVYKGSLPDGREVAVKQLQIEGSQGKREFKAEVEIISRIHHRHLVSLVGYCISENKRLLVYDYVPNSTLYFHLHGEGMPVLEWTNRVKIAAGAAKGIAYLHEDCNPRIIHRDIKSANILLDYNFEARVSDFGLARLAVDANSHVTTHVVGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDVSQPVGEESLVEWARPLLNDALESEEFEILTDPKLGKKYVESEMICMVEVAAACVRHSSARRPRMGQVVRAFDGLAMCDLSNGMRVGDSTQQSAEIRLLRRMAFGYNSEFLSHTSLNE 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01035 560 MobiDBLite consensus disorder prediction 1 143 - -
Vimu11g01035 560 MobiDBLite consensus disorder prediction 69 100 - -
Vimu11g01035 560 FunFam Proline-rich receptor-like protein kinase PERK8 213 316 - -
Vimu11g01035 560 Pfam Protein kinase domain 242 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01035 560 SUPERFAMILY Protein kinase-like (PK-like) 224 512 IPR011009 -
Vimu11g01035 560 Gene3D Transferase(Phosphotransferase) domain 1 317 528 - -
Vimu11g01035 560 FunFam proline-rich receptor-like protein kinase PERK8 317 528 - -
Vimu11g01035 560 SMART serkin_6 241 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01035 560 MobiDBLite consensus disorder prediction 7 30 - -
Vimu11g01035 560 ProSiteProfiles Protein kinase domain profile. 241 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g01035 560 MobiDBLite consensus disorder prediction 43 68 - -
Vimu11g01035 560 ProSitePatterns Protein kinases ATP-binding region signature. 247 269 IPR017441 GO:0005524
Vimu11g01035 560 CDD STKc_IRAK 247 517 - -
Vimu11g01035 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672|GO:0006468
Vimu11g01035 560 Gene3D Phosphorylase Kinase; domain 1 203 316 - -
Vimu11g01035 560 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 157 544 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01035 Vimu-Chr11 10999287 11002541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01035 119 510 Trihelix Transcription Factor Family AT1G68690 65.316 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu11g01035 Pkinase 6.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01035 - - gmx:100799296 701.819