Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01033 ATGGGTGGTCCAAACATGTACGAAGAAAGTAGTTGCTTTGATCCGAATGGGATGGTGGCAGAAGACTGTTTTTCCCAGATGGTTTCAAAATCAGAGGCAGTTATGTCTGTGACTAGCATACAGCCCCAAAACACCTTTGGGATGGAAAACTTAGCCTACACATATTCCAGTGGAGAAGATGCTTCTGCTGTTGCTATGGAAATCATTGCACACCCTCAACAAAACTCATACAATCAAGTCAATAACTTGAACCCCCAGTTTGTGCAAGTGGTGAACAACCATGGTTCATGTGAAGAGCTTTATTCTTTCCCTCCTCAATCCTCCACACTTGAGAGGGGTCACCATGATCACCAATTTCCTTACTCCACACCAACACCGGATCTCCTCAACCTTCTCCACTTGCCAATGACCTTTGAAAACCAAAGCAGCAATCTTCCAAAACCCTCTGGCCCTATGGGAACAGCAGACAGCACAAACGTCTCATCTGTTTCCTATGACCCTTTCTTGCATCTCAACCTGCAAGGACCTCCCCCAGCTCTGAGAAATGATTTTGCCTTTGGAGGAGGGGGTGTCATAGAAGGCAGTGGAATTGCGTACCAAGATTTTGGAAATGGGGTGGTGGAGTTCACTCAAGATGTGGGGAAAAAGAGAGGGGGGAAAAGGACCAAGCAGTTTACCAGTACTACTACTGAGAGACAAAGGAGAGTGGATTTGAGTAGTAAATTTGATGCTTTGAAAGAACTCATCCCAAACCCCTCCAAGAGTGACAGAGCATCTGTGGTGGGAGATGCTATTAACTATATCAGAGAGCTTAAGAGGACAGTGGACGAACTAAAACTATTGGTGGAGAAGAAAAGGCAAGAGAAACAAAGGGTAGTAGTGATGATGAGGCACAAGGTTGAAACTGAAGGGCAAGATGGTTCCAATCCCGACCCAGATGATGGTTCCTACAATGAAAGCTTAAGAAGTTCTTGGATACAAAGGAAATCCAAAGACACAGAGGTTGATGTGCGCATTGTTGACAACGAGGTAACAATAAAGCTTGTTCAGAGGAAGAAGATAGATTGTTTGGTGCATGTCTCACAGGTTCTTGATCAGCTCAACCTCGATGTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGCTATCTGTTCAATACCAAGATGTGTGACGGTTCTTGTGTTTATGCAAGTGCCATAGCCAACAAGCTCATTCAGGTCATGGACACGAGTTTGGCAGCAGTCTCTTCATGA 1260 0.4516 MGGPNMYEESSCFDPNGMVAEDCFSQMVSKSEAVMSVTSIQPQNTFGMENLAYTYSSGEDASAVAMEIIAHPQQNSYNQVNNLNPQFVQVVNNHGSCEELYSFPPQSSTLERGHHDHQFPYSTPTPDLLNLLHLPMTFENQSSNLPKPSGPMGTADSTNVSSVSYDPFLHLNLQGPPPALRNDFAFGGGGVIEGSGIAYQDFGNGVVEFTQDVGKKRGGKRTKQFTSTTTERQRRVDLSSKFDALKELIPNPSKSDRASVVGDAINYIRELKRTVDELKLLVEKKRQEKQRVVVMMRHKVETEGQDGSNPDPDDGSYNESLRSSWIQRKSKDTEVDVRIVDNEVTIKLVQRKKIDCLVHVSQVLDQLNLDVQHVAGGHIGDFCSYLFNTKMCDGSCVYASAIANKLIQVMDTSLAAVSS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01033 419 PANTHER TRANSCRIPTION FACTOR BHLH91 4 418 IPR045895 GO:0006355|GO:0048658
Vimu11g01033 419 MobiDBLite consensus disorder prediction 309 323 - -
Vimu11g01033 419 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 292 IPR036638 GO:0046983
Vimu11g01033 419 CDD bHLH_AtMYC1_like 229 286 IPR045896 -
Vimu11g01033 419 Gene3D - 214 300 IPR036638 GO:0046983
Vimu11g01033 419 Coils Coil 268 291 - -
Vimu11g01033 419 Pfam Helix-loop-helix DNA-binding domain 230 271 IPR011598 GO:0046983
Vimu11g01033 419 SMART finulus 228 277 IPR011598 GO:0046983
Vimu11g01033 419 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983
Vimu11g01033 419 MobiDBLite consensus disorder prediction 299 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01033 Vimu-Chr11 10962999 10965057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01033 6 416 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 39.520 4.92e-82 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu11g01033 HLH 4.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01033 - - vra:106767981 816.224