Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01029 ATGGAAAATGCTAATGGTCTTTACAGCATCAAGCTTAAAGATGAGGAAGTATTTCAAGTGAATGAAGAGGTGGAGGTGCGGCGTGTAGAGGAGGGGTTCCTAGGATCATGGCACCCTGGGATAGTTATCAAGTGTGGAAAGGTGAAGTGCTTTGTCAGATACAAGAATGTTCTAAAAAGTGACGGTTCGGGTTATCTTGTAACTACAGTGAGGGTTTCAAAAGCATCGGAATCTTCCAAGTATAGCATGCGGGGGTTCATTCGGCCACCGCCACCTTGGATTGAGTTTGGGAGATTTAACCTTAACTATGGTTTGTGCGTGGATGTAAACTGTCAGGGAGCTTGGTGGGAAGGAGTCATACTTGATCAGTGCGATGGAATGCTGAAAAGGAGCGTGTTTTTTCCAGATTTGGGTGATGAAATGCAGATTGAAATTCATCAAATGCGGATTACTCAGGACTGGAATGAAGTTACACGAGAATGGGAACTAAGAGGAAACTGGGTGTTTCTTGAATTGCTGGAGGAGTATCAGAATGGATCATTTGTTGGAGTTTCAGCTAAACAAATGTGGTATGATGTACTGGTAAAAAAGAGATTTGGAATGAGGGGAGAGTGGGCATATAATAAGAAAGAATTGTACAGGGAAGCGGTGTTAGGTGTAGTTGATGACTACTTAACTCTTGGAGTGAACAAAGTTTTCTCAGTTTTAGACTTCCCACCAGAGCAAGAATCAGTTGAACCAATGGCTAATATTGATTTGAACATGGCCTTGTCTGATAGAGATAATTTTGTCCAGAAAGAACCTGCTCCTCTTGTTCAAGAGGTTTTACCTGAGTTTGAAATAGAAATTGACCTTGAAGGTGATCCTGAAGTAGATTCTGGTGAGATATGTGAAAGCTCAAGGGGTTCAAAGGCCAAAATATCTAAGAGTCAAAGCAATAGATTGCCTCCACAAGGATCAGGGAAGAGGGTTACAAAGGCGTCTGCCTCTAGTCTTTTACCTCCGGATAAACCTCTAACTATTCTATCTTGGTTGATCGACAACAAGATGGTGTTTCCAAGATCTACCGTATATTATTACAATGAAAAAGCATGGTACCATGCAGTTTCAAGTTGGACTAGAGGGAAAGTAACTCGCAGTGGAATCAAGTGTTACTGTTGTAACATAGTTTACAGTTTTGTTGGCTTTGAAAATCATGCTAGTGGAGTGAATACCTGCACACCATCTGCTTGTATCTTTTTGAAAGATGGTAAATCACTCTTAGAATGCCAAATGGAAATAATGCAAAATCGGGTGACAAGAGGAACTAGCGAAAAACCAAGCATTAATTTCCCTCTGGAAGAGAATGACTTGATTTGTTCGCTTTGCCTCTATGGTGGTGAACTTATTTTATGTGATCAATGTCCATCTTCATTTCACATGACGTGTCTTGGATTGGAGCATATCCCTGATGGTCAATGGCTTTGCCCACAATGTCGTTGTGTTATTTGTCGCCAAAGCAAACTAGACGAAGATGAGGATGGCCATGCTGCCCTTACTTGCGTACAGTGTGAACATAAATACCATGTCAGGTGCCTGGAAAATGGAGGCATAGATTTATCAAGATGTTCAGAAAACTGGTTCTGTGGAAAAAGCTGCGAAAAGATACACAATGGCCTTCATGACCTATTAGGAAAGCCAGTTTTAGTGGGTGTGGACAATCTAACATGGACATTGGTGAAGTTTATGGAGCCTGAGTGTGATGATGTTGGTAGAATAAGACATGACAACTCAGTAGCAGAAAATTACAGCAAACTCAATCTTGCTCTTGCGGTGATGCATGAATGTTTTGAGTCCCTACAACAAAGTTTATCTAGCAGAGATATCATTGAAGATGTTATATTCGGCAGAAGGTCAGAGCTAAGGCGATTAAATTTCCAGGGTTTCTATACTGTACTACTTGAGAGAAATGAAGAAGTGGTTTCTGTGGCAACTGTTAGGGTCCACGGGGAGAAGGTAGCAGAAGTACCTTTTGTTGCTACAAGATTACACTACCGTCGACATGGATTTTGTCGCATTCTCATGAGTGGTCTTGAACAGTTGCTGATGCAATTAGGTGTGGGGAGGCTTGTTTTGCCGGCTGTTCCTAGTACGCTGAAGACATGGACCGACTCTTTTGGTTTTGCAAAGATGACCGTTTCTGAGAGGTCTAAATTTCTGGACAACACCTTCTTAAATTTTGAGGGTAGCATCATGTGCCATAAGCTGTTGATCACCATTCCACCTCCATATTCTGGCTTCTTAGTACCTAATTTTGAGAAGTCACATTCCAGATGTCATGTTTTACCTGAATATACCGTTGACCTCAATCAGTCTATTTCACTATCAGAAGGAGGGATGATATATCAGCAAACGGGGAAAACTTGTTCAGGCAACAACAATGGCGACAACAATGATTTTGTCAGTAGTGTTACTGTTCCAGTCAACAACAACATGGAGAAAGAAGTTCATGGTGATCAACAGTATCTTAAAGGAAGCAGCTCACAGTTCGTTCATGAAAAACAAGGTGACGACTACAACAGTGAGTATACTCAAAAGAAAGTAAGGTTTCTGCATAAGGGGAGCTTCTGA 2610 0.4138 MENANGLYSIKLKDEEVFQVNEEVEVRRVEEGFLGSWHPGIVIKCGKVKCFVRYKNVLKSDGSGYLVTTVRVSKASESSKYSMRGFIRPPPPWIEFGRFNLNYGLCVDVNCQGAWWEGVILDQCDGMLKRSVFFPDLGDEMQIEIHQMRITQDWNEVTREWELRGNWVFLELLEEYQNGSFVGVSAKQMWYDVLVKKRFGMRGEWAYNKKELYREAVLGVVDDYLTLGVNKVFSVLDFPPEQESVEPMANIDLNMALSDRDNFVQKEPAPLVQEVLPEFEIEIDLEGDPEVDSGEICESSRGSKAKISKSQSNRLPPQGSGKRVTKASASSLLPPDKPLTILSWLIDNKMVFPRSTVYYYNEKAWYHAVSSWTRGKVTRSGIKCYCCNIVYSFVGFENHASGVNTCTPSACIFLKDGKSLLECQMEIMQNRVTRGTSEKPSINFPLEENDLICSLCLYGGELILCDQCPSSFHMTCLGLEHIPDGQWLCPQCRCVICRQSKLDEDEDGHAALTCVQCEHKYHVRCLENGGIDLSRCSENWFCGKSCEKIHNGLHDLLGKPVLVGVDNLTWTLVKFMEPECDDVGRIRHDNSVAENYSKLNLALAVMHECFESLQQSLSSRDIIEDVIFGRRSELRRLNFQGFYTVLLERNEEVVSVATVRVHGEKVAEVPFVATRLHYRRHGFCRILMSGLEQLLMQLGVGRLVLPAVPSTLKTWTDSFGFAKMTVSERSKFLDNTFLNFEGSIMCHKLLITIPPPYSGFLVPNFEKSHSRCHVLPEYTVDLNQSISLSEGGMIYQQTGKTCSGNNNGDNNDFVSSVTVPVNNNMEKEVHGDQQYLKGSSSQFVHEKQGDDYNSEYTQKKVRFLHKGSF 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01029 869 PANTHER PHD FINGER PROTEIN 12 216 842 IPR042163 GO:0003714|GO:0045892
Vimu11g01029 869 CDD NAT_SF 645 705 - -
Vimu11g01029 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 495 549 IPR013083 -
Vimu11g01029 869 MobiDBLite consensus disorder prediction 290 331 - -
Vimu11g01029 869 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 640 721 IPR016181 -
Vimu11g01029 869 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 594 739 IPR000182 GO:0016747
Vimu11g01029 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 494 IPR013083 -
Vimu11g01029 869 Pfam Acetyltransferase (GNAT) family 628 716 IPR000182 GO:0016747
Vimu11g01029 869 SUPERFAMILY FYVE/PHD zinc finger 434 493 IPR011011 -
Vimu11g01029 869 ProSiteProfiles Zinc finger PHD-type profile. 450 495 IPR019787 -
Vimu11g01029 869 Pfam PHD-finger 452 493 IPR019787 -
Vimu11g01029 869 Pfam Agenet domain 22 92 IPR008395 -
Vimu11g01029 869 Pfam Tify domain binding domain 375 426 IPR032308 -
Vimu11g01029 869 SMART agenet_At_2 99 156 IPR014002 -
Vimu11g01029 869 SMART agenet_At_2 16 95 IPR014002 -
Vimu11g01029 869 Gene3D - 568 725 - -
Vimu11g01029 869 SMART PHD_3 452 493 IPR001965 -
Vimu11g01029 869 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01029 Vimu-Chr11 10886007 10892597 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01029 301 698 PHD Transcription Factor Family AT5G58610 45.255 1.20e-101 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu11g01029 Acetyltransf_1 0.0003 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01029 - - var:108323857 1637.47