Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01028 ATGGGAAGGGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACCTTCTCCAAAAGGAGAGCTGGGTTACTCAAGAAAGCACACGAGATCTCTGTGCTCTGTGACGCTGAGGTCGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCTTGGAGTGACAGTATTTGGTTACTTGTCAAGCTCATTTTCGATCTCAGCATGGAGAAGATACTGGAACGCTATGAAAGGTATGCCTATGCTGAGAGACAACTTGTTGCCAATGATTCCGAATCACAGGGAAATTGGACCATTGAGTACACCAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACCATAGGCACTATATGGGAGAAGATTTAGGTTCAATGAGCCTAAAAGAGCTTCAGAGTCTGGAGCAGCAGTTAGATACTGCTCTCAAACAAATTCGTACCCGCAGAAACCAACTCATGTACGAGTCGATCTCGGAGCTTCAGAAGAAGGAGAAAGTTATACAGGAGCAGAATAACATGCTTGCAAAGAAGATAAAGGAGAAAGAAAAGGTTGCAGCACAGCAGGCACAATGGGAGCATCCAAACCATGGAGTTAATGCATCTTTCTTGCTACCTCAGCCACTTCTGAACATGGGTGGCAATTATCGTGAGGAAGCACCAGAAGTAGGAAGGAATGAACTTGACCTCACTCTGGAACCCTTGTATTCCTGCCACCTTGGATGCTTTTGA 756 0.4511 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSWSDSIWLLVKLIFDLSMEKILERYERYAYAERQLVANDSESQGNWTIEYTRLKAKIDLLQRNHRHYMGEDLGSMSLKELQSLEQQLDTALKQIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKEKEKVAAQQAQWEHPNHGVNASFLLPQPLLNMGGNYREEAPEVGRNELDLTLEPLYSCHLGCF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01028 251 SUPERFAMILY SRF-like 2 102 IPR036879 GO:0003677|GO:0046983
Vimu11g01028 251 Coils Coil 166 196 - -
Vimu11g01028 251 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Vimu11g01028 251 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu11g01028 251 FunFam MADS-box transcription factor MADS-MC 13 68 - -
Vimu11g01028 251 Coils Coil 137 160 - -
Vimu11g01028 251 Pfam K-box region 99 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu11g01028 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu11g01028 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu11g01028 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu11g01028 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Vimu11g01028 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu11g01028 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu11g01028 251 CDD MADS_MEF2_like 2 94 IPR033896 GO:0000977|GO:0045944
Vimu11g01028 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu11g01028 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01028 Vimu-Chr11 10867101 10873067 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01028 1 251 MADS-box Gene Family AT1G26310 60.595 1.31e-103 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu11g01028 K-box 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01028 K09264 - gmx:100810129 436.802