Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01024 ATGGAGGACTGCATACTTCTGGGTTGGCTGCCTTGTCATCTGTATCTCCAATTACTGCACATGCTCCAGCAGAGAAAGGACCAGACAGCTGCTGCTCCAATTGAGAGAGTTAAATTGCTCATTCAAAATCAGGATGAAATGATCAAAAGTGGTCGGTTATCTGAACCGTACAAGGGAATTGGTGATTGTTTTGCTCGAACCATAAAGGATGAGGGTGTAATTTCTCTTTGGAGAGGCAATACTGCCAATGTTATCAGATACTTCCCCACTCAGGCTCTGAACTTTGCTTTTAAGGATTACCTCAAGAGGCTATTTAACTTTAAAAAGGACAAAGATGGCTACTGGAAATGGTTTGCTGGAAATTTGGCATCTGGTGGGGCTGCTGGGGCTTCTTCTCTCTTATTTGTCTATTCTTTGGATTACCCGAACTGTTTGGCTAACGATTCAAAGGCTGCAAAGAAGGGTGGTGAAAGGCAGTTTAATGGTCTGATTGATGTATACAGGAAAACCATTAAGTCTGATGGTATTGCAGGCCTTAATCCGTTCTTGCAGTTTGATGTTGTTTGCTGTTACAAGATGTCATCCACTTTAGTGGAAATCTCTTTTGTCGAAGTCATTTATGTGTGTTTATCTTTAGCAATTGTGATGCTTCCAAACCCAGTCAACAATTTCACTGTTTCCACCATTCACAGTGAGGGGGAGTATGTTTCCAAGACACTGCAAGTTAAGTATGGCAGTTCAAGCCACATAACTTTCAGCCACTACAGGCCCCATCACCCATCAGTCTCAGAGATGGCAGTCCCTGCAGTTTTGTCGCATTTAGCCACTGCAGGCCCCATCCTTACTTGA 849 0.4323 MEDCILLGWLPCHLYLQLLHMLQQRKDQTAAAPIERVKLLIQNQDEMIKSGRLSEPYKGIGDCFARTIKDEGVISLWRGNTANVIRYFPTQALNFAFKDYLKRLFNFKKDKDGYWKWFAGNLASGGAAGASSLLFVYSLDYPNCLANDSKAAKKGGERQFNGLIDVYRKTIKSDGIAGLNPFLQFDVVCCYKMSSTLVEISFVEVIYVCLSLAIVMLPNPVNNFTVSTIHSEGEYVSKTLQVKYGSSSHITFSHYRPHHPSVSEMAVPAVLSHLATAGPILT 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01024 282 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vimu11g01024 282 PRINTS Mitochondrial carrier protein signature 131 149 IPR002067 GO:0055085
Vimu11g01024 282 PRINTS Mitochondrial carrier protein signature 79 99 IPR002067 GO:0055085
Vimu11g01024 282 PRINTS Adenine nucleotide translocator signature 57 78 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g01024 282 PRINTS Adenine nucleotide translocator signature 90 102 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g01024 282 PRINTS Adenine nucleotide translocator signature 116 129 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g01024 282 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 104 IPR018108 -
Vimu11g01024 282 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 27 189 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu11g01024 282 SUPERFAMILY Mitochondrial carrier 29 179 IPR023395 -
Vimu11g01024 282 Gene3D Mitochondrial carrier domain 26 184 IPR023395 -
Vimu11g01024 282 Pfam Mitochondrial carrier protein 28 108 IPR018108 -
Vimu11g01024 282 Pfam Mitochondrial carrier protein 115 179 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01024 Vimu-Chr11 10822641 10823567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01024 28 190 Antiporters AT4G28390 82.317 7.14e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01024 K05863 - gmx:100818408 276.944